Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01612 TTGTTTTCCCATAAGAACATGAAAGAGAGTGGCAGAAAACAAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGGTGCACCAGAGATTGTGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTCAACAAAATGCTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTAAGTTCAATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATTTCCTCTCTGCAACAACAAGTTGATGAGCTCCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTTCACATGAGAATGAGCCAATTTTCACCACCATCATCGGATCAACACCACCACCACCATCAAGCCTCCCTAATGCCTCACGAACCCTCCAATTCATCATCAGAAAACATGTTCCAATCTAGCAGGGTCTTGTCTTCACAAAGCAAGTCCCTTTTTGGCATGGACATGGTCGTTGACCAGACCATCATGGGGCAATCTTTGTGGTCATACTAG 570 0.4667 MFSHKNMKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAQAEVVHMRMSQFSPPSSDQHHHHHQASLMPHEPSNSSSENMFQSSRVLSSQSKSLFGMDMVVDQTIMGQSLWSY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01612 189 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Vimu4g01612 189 Coils Coil 98 118 - -
Vimu4g01612 189 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Vimu4g01612 189 MobiDBLite consensus disorder prediction 126 159 - -
Vimu4g01612 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 156 - -
Vimu4g01612 189 MobiDBLite consensus disorder prediction 144 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01612 Vimu-Chr4 17305188 17309721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01612 7 188 AS2 family AT1G31320 64.286 4.65e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu4g01612 LOB 1.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01612 - - gmx:100803188 299.286