Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01608 ATGGACCCCATGAACACATTTACAGGGATTGAAAATTACAAATTGATCTTCTGGGCATTGAGGTTTCATGGCAAAATCTTGTTTCGTGAGATTGCACTTGATGTGTACAGGGTGTGGCAGCCTTCAGAGAATGTGATATTGGTGAGGTGGAACCTTAGGGGAGTGCCAAGGGTTCCATGGGAAGCCAAAGGAGAGTTTCAGGGCACTTCAAGGTACAAATTGGACAGAAATGGCAAGATTTATGAACACAAAGTTGATAACTTGGCTTTCAATTTCCCACAGAATATTAAACCAGTTTCAGTTTTGGATTTGGTAAGGGCAAGCCCTGCAAGTCCAAATCCTACATATTTGTGGGGTCCTGTTGACGCCTACTCTTCTTCATGGATAGCCTTTTACAAGGCAGTTAGGGAGACATTGGATCAAGAAGGGAGTTTGCTCCTACAAGATGGTCTCGCTACATGCTCATAG 468 0.4359 MDPMNTFTGIENYKLIFWALRFHGKILFREIALDVYRVWQPSENVILVRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQNIKPVSVLDLVRASPASPNPTYLWGPVDAYSSSWIAFYKAVRETLDQEGSLLLQDGLATCS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01608 155 PANTHER RIKEN CDNA 2310061I04 GENE 2 121 IPR018790 -
Vimu4g01608 155 Pfam Uncharacterized conserved protein (DUF2358) 2 83 IPR018790 -
Vimu4g01608 155 SUPERFAMILY NTF2-like 2 84 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01608 Vimu-Chr4 17227484 17227951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01608 - - gmx:100804596 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01608 4 17227484 17227951 Vimu4g01608 4 17227484 17227951 ECH
Vimu4g01608 4 17227484 17227951 Vimu5g00897 5 12201452 12202185 PCT