Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01606 ATGGCCATGGAAACAACAAGAGTGAGAAAAAGTGCTATCATACTTCTACTCTACCTGACTTTGTCTGCCATTTCTCTCACTCAATGTGATGCAGATAGATCAATGAAGGTATTAAGAGGCCTCAAAGATAAAAGAAATTCAAGCAAGAACAAAAACCCAAAGAAGTTGAAAACAGTTAAAAAATTAGTTGAGAATCCAACCGTTTTCTCATCAAATGTAGAACCATATAGTCTTAGCTCGCCATTTTCTTTGCCCCCTTATGAATCACTGGCTCCAGAAAACAGCCCTCCGTTTTGTGTGTTCCCACCACCAGGCACTCCTCCTTCCACCACCGTGCCAACCCCCACAGGCTTTCAACCCACAACGCCGTCACCACCTGACTTTTACACTTCACCAGTTATCCCAACCCAAAACCCCCCTCCAAACCCCCTAATCATAACACCAGGCCCACCCACTATCACGCCGGGCTCGCCTGAGCCCGTGCTCAATCCTCCCATCATTATCCCAAGTCCACCAGACACCTCAATGGGCCCACCTTACTTCGAGCCCAGCCCACCGTACTTTGAGCCCACCCCACCTTTCATAATCCCTTCCCCAACAGGTGGCATTACCCCAGGCTCACCAACGATAATCCCTTCCCCAACAGAAGGCACTCTCCCAAGCCCACCGAGCACTGTGCCATCCCCAACTGAAGGCAGTGTCCCTGGCCCAGGTGTGTTTCAGCCACCTGTGGTGTACCCTCCACCAAGTGTGCCACCACCACCGAACTATGCCCCAAGGATCACCTTGTGGTGTGTGGCTAAGCCCTCAGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCCTGCTGGTCTGGAGCAGATTGCACCTCCATTCAGCCCAATGGGCCCTGCTATGAGCCCAATACTGTGTATGCACATGCTTCCTATGCTTTCAATAGTTATTGGCAACGGACTAAAGGTGCTGGAGGCAATTGCGAGTTTGGAGGGACAGCCATGCTAGTTGCTGTTGACCCCAGCTTCGATGGGTGTCACTTCATCTACAACTGA 1053 0.509 MAMETTRVRKSAIILLLYLTLSAISLTQCDADRSMKVLRGLKDKRNSSKNKNPKKLKTVKKLVENPTVFSSNVEPYSLSSPFSLPPYESLAPENSPPFCVFPPPGTPPSTTVPTPTGFQPTTPSPPDFYTSPVIPTQNPPPNPLIITPGPPTITPGSPEPVLNPPIIIPSPPDTSMGPPYFEPSPPYFEPTPPFIIPSPTGGITPGSPTIIPSPTEGTLPSPPSTVPSPTEGSVPGPGVFQPPVVYPPPSVPPPPNYAPRITLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYEPNTVYAHASYAFNSYWQRTKGAGGNCEFGGTAMLVAVDPSFDGCHFIYN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01606 350 SMART X8_cls 263 347 IPR012946 -
Vimu4g01606 350 PRINTS Proline rich extensin signature 85 97 - -
Vimu4g01606 350 PRINTS Proline rich extensin signature 104 125 - -
Vimu4g01606 350 PRINTS Proline rich extensin signature 174 199 - -
Vimu4g01606 350 PRINTS Proline rich extensin signature 128 144 - -
Vimu4g01606 350 PRINTS Proline rich extensin signature 147 164 - -
Vimu4g01606 350 Gene3D - 260 346 - -
Vimu4g01606 350 Pfam X8 domain 263 334 IPR012946 -
Vimu4g01606 350 FunFam Glucan endo-1,3-beta-glucosidase 4 259 350 - -
Vimu4g01606 350 MobiDBLite consensus disorder prediction 215 230 - -
Vimu4g01606 350 MobiDBLite consensus disorder prediction 213 234 - -
Vimu4g01606 350 PANTHER BETA-1,3 GLUCANASE 262 347 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01606 Vimu-Chr4 17199760 17201219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01606 262 347 Glycoside Hydrolase AT3G13560 47.126 1.09e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01606 - - gmx:100794886 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01606 4 17199760 17201219 Vimu4g01606 4 17199760 17201219 ECH