Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01596 ATGGCCGTGTCACTGTGCAGAAGTCGCACTGCTTCATCACTCAATTTGTTTGCCAATACTCTTCGCCGATTCTCTACTGGGGTGACAAACACCAGTGCTCAAAGAACGCCAGAGAGTATAGTGAATCAAATGATGTATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAATTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCAGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATATTGTTTAATCCAGATGCCCTCTGGTGTTAAAAAGTTAATTGATTCTCGGTGTAGGGCTACCATTGGTGTTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCCGGACAAAAACGATGGCTTGGTCGAAGACCTGTTGTTCGAGGAGTGGCTATGAATCCTGTAGATCATCCTCATGGGGGAGGAGAGGGTAAAAGCAAGAGTGGTGGAAAATGGGGAAGAGGATCTCTCACTCCTTGGGGCAAGCCAACCAAGGGTGGCTATAAGACTGGACCCCTGAAGCGCAGAAGTTAG 597 0.4774 MAVSLCRSRTASSLNLFANTLRRFSTGVTNTSAQRTPESIVNQMMYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQMPSGVKKLIDSRCRATIGVVSNPSHGDRKLRKAGQKRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSGGKWGRGSLTPWGKPTKGGYKTGPLKRRS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01596 198 Gene3D Ribosomal protein L2, domain 3 124 198 IPR014726 -
Vimu4g01596 198 MobiDBLite consensus disorder prediction 152 198 - -
Vimu4g01596 198 FunFam 50S ribosomal protein L2 124 198 - -
Vimu4g01596 198 Pfam Ribosomal Proteins L2, C-terminal domain 53 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu4g01596 198 SUPERFAMILY Translation proteins SH3-like domain 53 188 IPR008991 -
Vimu4g01596 198 Gene3D - 47 123 IPR014722 -
Vimu4g01596 198 PANTHER RIBOSOMAL PROTEIN L2 31 197 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu4g01596 198 FunFam 60S ribosomal protein L2, mitochondrial 47 123 - -
Vimu4g01596 198 ProSitePatterns Ribosomal protein L2 signature. 146 157 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vimu4g01596 198 SMART Ribosomal_L2_C_2 51 184 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu4g01596 198 NCBIfam 50S ribosomal protein L2 47 196 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01596 Vimu-Chr4 17137486 17138613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01596 43 163 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.860 5.65e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01596 - - gmx:100792418 311.227