Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01591 ATGGCGGCACGGAACCTTTGCTGCATGGCACTGCGATCGTCAAAGCTTCTCTCTCGCCCTTCCCATCTTCTCTCTGTTCAGATGCGGATGCAGATGCAGATGCTGTCCTCTTCTCTTCCTCTCACCCGAAAGGCAAGCCCTTTTCCGACCAAAATAAAGATACTTAAGCCTAATAAATGGGTGTTTGTTATTTTATTACTATTATTTGGGATATTTTTGTTACTTGTTCATGAATCAGGTTTGTTTGAATGGCAGATGAGCATGGATGCACAGAGTGTTGCTTCCAAGCTTAATAGTTCTGGATTGCTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGTGACGCTTATGATGGAAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATCGCAGATGTGGCATGCATGGGTGGAAGAGAGACGAATGATGCAATTTCTGCTGCCTATACTGCATATCGATCATGGAGCAAAACCACTGCTGCTGAAAGAAGCAAATTTTTGAGGAAATGGTATGATTTGCTAATGGCACATAAAGAAGAACTTGCACAACTTATAACCTTGGAGCAGGGGAAAACTCTTAAAGAGTCTATTGGTGAGATAAACTATGGGGCTGGATTTATTGAGTTTTCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTTTATCTGATCGGAGATTGTTTGTTCTTAAGCAGGTTGTTAGAAGTTATATAGTTGAAGAGGATCAGCCTACTGATTTGAAGGGTGACACAGAAGTCATTTGGGCGAAGGTGTTCAATTTTTGGAGTCAGATTCAGCGTTTTATACCTGAGGACATGAATGTTATTCAAGAAGTGACAATGTTAGGACCCCATTTGTGGACTCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTGATAAAACCCTCTGAACTTACACCTCTCACTGCTTTAGCTGCTGCAGAACTCTCCATTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTTGTAATGGGAAATGCTCCTGAAATTGGAGACAGTTTGCTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCAACAGCTGTTGGAAAGAAATTAATGGCTGGTTCAGCTGAGACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTTGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGCGTTTGTGCAAATAGAATTATTGTACAAGATGGTATATATGAAAAATTTGCAAATGCACTCCGTGATGCTGTTCTGAACATGAAAGTTGGGGATGGTTTTAGTGAAGATGTGGCACAGGGCCCTCTAATCAATGAAGCTGCTGTGCAAAAGGTGGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATTTACATTTTATGAACCAACGGTGATCAGTGATGTCAACATTGATATGCGCATATCCAGAGAGGAAGTATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACCAACGCAGGTTTGGGTTCATACGTGTTTACGAACAGTATCCAACGATCATGGCGTGTAGCTGAGGCTCTAGAATATGGACTTGTTGGTGTTAATGAAGGAGTAATTTCAACTGAGGTGGCTCCTTTCGGTGGTTTTAAACAATCCGGGCTCGGAAGAGAAGGCTCCAAATATGGAATGGATGAATATTTAGAGATAAAATATGTCTGCATGGGAAACATGAACAAAGAATGA 1914 0.4227 MAARNLCCMALRSSKLLSRPSHLLSVQMRMQMQMLSSSLPLTRKASPFPTKIKILKPNKWVFVILLLLFGIFLLLVHESGLFEWQMSMDAQSVASKLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIADVACMGGRETNDAISAAYTAYRSWSKTTAAERSKFLRKWYDLLMAHKEELAQLITLEQGKTLKESIGEINYGAGFIEFSAEEAKRIYGDIIPAPLSDRRLFVLKQVVRSYIVEEDQPTDLKGDTEVIWAKVFNFWSQIQRFIPEDMNVIQEVTMLGPHLWTQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPEIGDSLLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQDGIYEKFANALRDAVLNMKVGDGFSEDVAQGPLINEAAVQKVESLIHDATSKGAKVILGGKRHSLGFTFYEPTVISDVNIDMRISREEVFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCMGNMNKE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01591 637 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 255 413 IPR016162 GO:0016491
Vimu4g01591 637 FunFam Succinate-semialdehyde dehydrogenase, mitochondrial 240 422 - -
Vimu4g01591 637 FunFam Aldehyde dehydrogenase, putative 601 627 - -
Vimu4g01591 637 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 414 636 IPR016163 GO:0016620
Vimu4g01591 637 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 294 634 - -
Vimu4g01591 637 SUPERFAMILY ALDH-like 93 234 IPR016161 GO:0016491
Vimu4g01591 637 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 405 412 IPR029510 GO:0016491
Vimu4g01591 637 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 96 242 IPR016162 GO:0016491
Vimu4g01591 637 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 433 444 IPR016160 GO:0016491
Vimu4g01591 637 FunFam Succinate-semialdehyde dehydrogenase I 409 598 - -
Vimu4g01591 637 SUPERFAMILY ALDH-like 283 635 IPR016161 GO:0016491
Vimu4g01591 637 Pfam Aldehyde dehydrogenase family 295 629 IPR015590 GO:0016491
Vimu4g01591 637 Pfam Aldehyde dehydrogenase family 115 237 IPR015590 GO:0016491
Vimu4g01591 637 CDD ALDH_F5_SSADH_GabD 124 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01591 Vimu-Chr4 17090907 17113543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01591 85 637 Aldehyde Dehydrogenase Gene Family AT1G79440 70.344 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01591 K17761 - rcu:8279668 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01591 4 17090907 17113543 Vimu4g01591 4 17090907 17113543 ECH