Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01587 ATGGAGAGAATGTTCCCTCCAAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGTTTTGTCGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCTACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATGAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAGAACATGGCATCTGCGGCCAGTAACTTAAAGGGTGGTATCGTACCTCCTCAAAGCATTCCTGACATGGGGGTGTTGAAGGAGTTTGGTTCCCCTCTTGGTTTTTCTTCTTTTCAAGATCTTGAGAATATCTATGGTGGTGACCAAATTGAGCTTCAGCACAACATGGAGAAGCCACCCCTTGATCATGGATTTATGTCGATGAATGAGAGTTTGTGTTTGGGGAAGAAGAGGTCGAATCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTCCAAGACCTGGGAGGGCCAGCCTCATCTTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGGGACCATATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACCGACATTGATCCCATGTCAGACATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTTGTCGGGGAAAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCTCCTCTTCAATCTGAAAGGATGAGTCCTATGATCAGCACTGGTACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA 1146 0.4712 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSMKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAASNLKGGIVPPQSIPDMGVLKEFGSPLGFSSFQDLENIYGGDQIELQHNMEKPPLDHGFMSMNESLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDASMKLERPSPRRAPLQSERMSPMISTGTMAQGRGSPFG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01587 381 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g01587 381 FunFam Myb family transcription factor 34 92 - -
Vimu4g01587 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 193 IPR044848 GO:0003700
Vimu4g01587 381 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Vimu4g01587 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Vimu4g01587 381 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Vimu4g01587 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Vimu4g01587 381 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Vimu4g01587 381 MobiDBLite consensus disorder prediction 344 381 - -
Vimu4g01587 381 Gene3D - 34 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01587 Vimu-Chr4 17051429 17053368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01587 4 381 G2-like Transcription Factor Family AT1G79430 56.777 1.36e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu4g01587 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01587 - - gmx:100807793 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01587 4 17051429 17053368 Vimu4g01587 4 17051429 17053368 ECH
Vimu4g01587 4 17051429 17053368 Vimu5g00889 5 11999265 12000964 PCT