Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01585 ATGGGCCACCGCTGTTGCAGCAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAAAAGCTTCTCAGATATATCAACACACATGGACATAAAAGATTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGATGGATTAATTATCTTAGGCCGGATCTCAAGAGGGGTTCCTTCACAGCTGAAGAAGAGCAGATCATAATTGATATTCATAGAATTCTTGGAAACAGATGGGCACAAATTGCTAAACACCTACCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTTCTATCTTCTCATAGAAGAAGCTCAGCATCTACCATCTCCAATATGCAGAAAAAATCCAATCCTATCTTCATTATGAGTTCACACACAACAAATGCACCAGTGGAAACTACTTTTCAAACCTTTTCTTTATTACCTAAGCCTCCACTAAACATTGTTCAAACTCCCTCCAGCATTATCACATCTGAATATCAAACATCACCTATTATTTCAAATAAATTCTCGTCAGATTTGCCTTATGAACTGTTAATCGACAACGGCTGCAACATTTGTTCACCTTCATATATGAACCCCACTGCAGTTGAATTGTCGAACAATGAAAACATTGCTAATTGGGTTTCAAGAGTTAACTTTGATGATTTCAGCGGTCAAACACTTGAAGAGGGAACACAAGAGCAGGTGCAGCAAGATAAGGACAAGATCTGTGAGGATACTGTAACTGATGTGAGAGAAGCTAACAAGGGCAATCTTGAAAGAAGTGCTTCTTTCGAGAGTTCTAACTTTGATTTTGGCTTGTTGGAGAGTGTACTTTCCTCCGAATTTATCTCTCATGATCTTAGTTGTATGGATGAACTTGCATGGAACTTTTAG 942 0.3917 MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGHKRLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSASTISNMQKKSNPIFIMSSHTTNAPVETTFQTFSLLPKPPLNIVQTPSSIITSEYQTSPIISNKFSSDLPYELLIDNGCNICSPSYMNPTAVELSNNENIANWVSRVNFDDFSGQTLEEGTQEQVQQDKDKICEDTVTDVREANKGNLERSASFESSNFDFGLLESVLSSEFISHDLSCMDELAWNF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01585 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 51 IPR017930 -
Vimu4g01585 313 Gene3D - 10 57 - -
Vimu4g01585 313 Gene3D - 58 137 - -
Vimu4g01585 313 ProSiteProfiles Myb-like domain profile. 8 51 IPR001005 -
Vimu4g01585 313 FunFam Transcription factor MYB86 58 132 - -
Vimu4g01585 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Vimu4g01585 313 PANTHER MYB DOMAIN PROTEIN 55 1 280 - -
Vimu4g01585 313 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Vimu4g01585 313 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Vimu4g01585 313 Pfam Myb-like DNA-binding domain 13 51 IPR001005 -
Vimu4g01585 313 SUPERFAMILY Homeodomain-like 10 98 IPR009057 -
Vimu4g01585 313 CDD SANT 59 99 IPR001005 -
Vimu4g01585 313 SMART sant 56 104 IPR001005 -
Vimu4g01585 313 SMART sant 12 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01585 Vimu-Chr4 16995572 16997058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01585 1 313 MYB Transcription Factor Family AT3G12720 47.059 6.79e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g01585 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01585 K09422 - gmx:100791209 496.508