Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01584 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGGAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACATGGAATGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGTTATTGGAAAGCTACAGGGAAAGACAGGCCAGTGCACTCTCAAAAGAAGCCTGTTGGCATGAAGAAGACATTGGTGTACTATAGAGGTAGAGCACCACATGGCATTAGAACGAACTGGGTTATGCATGAATACCGCTTGATTGAATCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGATGATTCAAATGCCTGCGAAACCTAGTAAAGAAGAAGAACAACAAGCCGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTGGGAGAAGACTCAAGTGGCACTGAGTTTTCCAGAGAAATGGAAACGGTGGAGGAAAAAATTCTCAATCACGAATACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGCGATGAAGCAAACAGTGCAACTAATTCATATACAATGGGAATGGGATACCCCAGCAATCTATTTCAGGATGTGGAAATACCTTCTTTTGCTGCCATGCATTATCAATTCCCATACACACCTTTGGTGCTGGAAGACTTTCCTCAAATTACATTGCCAGAGACAAAGTCAACGAAACCAGAAATTAGTGATTCCTGCATGTTATATGACAGACACAGGGACTGCATGAATGGAACGCTAGAAGAGATCATCTCCTTGTGTTGCACTCAAGATAATAACGTCCCTTTTCCCATGCTAGAATGA 1044 0.4301 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKMIQMPAKPSKEEEQQAEDAKKESMWISEEQMLGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGMGYPSNLFQDVEIPSFAAMHYQFPYTPLVLEDFPQITLPETKSTKPEISDSCMLYDRHRDCMNGTLEEIISLCCTQDNNVPFPMLE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01584 347 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vimu4g01584 347 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vimu4g01584 347 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Vimu4g01584 347 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vimu4g01584 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 211 - -
Vimu4g01584 347 FunFam Nac domain-containing protein 86 15 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01584 Vimu-Chr4 16972599 16976531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01584 1 336 NAC Transcription Factor Family AT1G54330 52.226 2.43e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01584 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01584 - - gmx:100808325 671.003