Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01557 ATGGGAACGCCTGTGAACATCATCGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGGATGCATGGATTGATGGTGAGGTCACAGAAATCAATGGCAAAAATGTTACCATCACTGCCACAAATGGGAAAACTCTCACTCACGAAGCTCATCTTCTTCCTTCGCCTACTGCGATTCCAAGAACTCGCGCTCTGCTCTCAATTTGGCGTCGTCACTCGCGATCACCGTTAGCCACCGTCACAGTCGTGGTAGCCGTCGCCCAAGATCGTCGTCGCTCTCCGTGGGTCGCCGTTGCTCGCAGTGGCCCCTCGACCCTCGCTCTGTTCTGTTTTTCGTTTCGCTGTGAAAATTTTTTATAA 357 0.5154 MGTPVNIIVGSQVWVEDPEDAWIDGEVTEINGKNVTITATNGKTLTHEAHLLPSPTAIPRTRALLSIWRRHSRSPLATVTVVVAVAQDRRRSPWVAVARSGPSTLALFCFSFRCENFL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01557 118 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu4g01557 118 Pfam Myosin N-terminal SH3-like domain 10 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu4g01557 118 Gene3D - 11 52 IPR008989 GO:0003774|GO:0005524|GO:0051015
Vimu4g01557 118 SUPERFAMILY Myosin S1 fragment, N-terminal domain 12 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01557 Vimu-Chr4 16515937 16516666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01557 1 46 Myosins gene family AT1G08730 73.913 3.97e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01557 K10357 - gmx:100817933 93.2041