Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01555 ATGGTGGCAGATATTTCAAGCATATACCCCAAAGATACAGAAGCACCACCTGCAGGAGTTGATGACATGACCAAGCTAGCTTACCTTCATGAGCCAGGAGTCCTGCATAACCTTGCAACTCGTTTTTCTCTCAATGAGATATATCAGTACAAAGGTGCAGCATTTGGAGAGCTTAGTCCTCACCTTTTTGCTGTAGCTGACACATGTTACAGGGCAATGATAAATGAAAATGGAAGCCAATCCATTTTGGTAAGTGGAGAGAGTGGAGCTGGTAAAACTGAGACAACGAAAATGCTCATGAGGTACCTAGCATTCATGGGGGGTAGATCTGCTACTGAAGGAAGAACTGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTGGAAGCATTTGGAAATGCCAAAACTGTCAAAAACAACAATTCAAGTCGATTTGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGGAAGATTTCCGGAGCTGCAATCCGAACATATCTGCTTGAAAGGTCACGAGTTTGCCAGGTCTCTGACCCAGAGAGAAACTATCATTGCTTTTACATGCTTTGTGCAGCACCACCAGAGGACGCCAAAAAGTACAAGTTAGGGGATCCAAGGCAATTCCACTATCTTAATCAATCAAACTGTTATGAAGTGTCAAATGTAGATGATGCAAAAGAATACTTGGAGACCAAAAATGCAATGGATATTGTGGGCATTAACCAAGAAGAGCAGGATGCTATCTTCCGTGTGGTAGCTGCAATCCTCCATCTTGGAAACATTGACTTTGTCAAAGGGAAAGAAGTGGATTCTTCAAAATTGAAAGATGATAAATCACTCTTCCACCTCCAAACAGCTGCGGAGTTATTCATGTGTGATGCAAAAGCACTGGAAGATTCACTTTGCAAGCGTGTCATTGTAACTCCTGATGGTAACATCACCAAACCTCTGGACCCTGATGCAGCTGCTTTGAGTCGAGATGCCTTGTCAAAGACTGTGTACTCCAAATTGTTTGATTGGATTGTGGACAAAATTAACAGTTCAATTGGCCAAGATTCCAATGCAGTAAGCATAATAGGAGTCCTTGACATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTATGCATCAACCTAACGAATGAGAAGTTGCAACAACATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATCAATTGGAGCTATGTAGAGTTTGTGGATAATCAGGATGTTCTTGATCTTATCGAGAAGAAACCAGGGGGAATAATCGCTCTTCTAGATGAAGCCTGCATGTTCCCAAAATCAACTCATGAAACTTTTGCACAAAAGATGTACCAGACATATAAATCCCACAAGCGCTTCAGCAAGCCAAAACTTGCTCGAACAGATTTCACAATTAACCATTATGCTGGAGATGTCACGTATCAAGCAGATTATTTTCTTGATAAAAACAAAGATTATGTTGTAGCAGAGCATCAAGCTCTTTTATGTGCTTCCAAGTGCCCATTTGTTGCTAATCTTTTCCCTCCTTTACCAGAGGAAACTTCAAAGCAATCCAAATTCTCTTCCATTGGTTCACAGTTTAAGCAACAACTGCAATCTCTCATGGAGACACTGAATACAACAGAACCACATTACATACGATGTGTGAAACCAAATACAGTTTTGCAGCCTGGGATCTTTGAGAACTTCAACGTCTTGAACCAATTAAGATGTGGGGGAGTACTTGAGGCAATACGGATTAGTTGTGCTGGATATCCAACAAAAAGAACTTTTGAAGAGTTTCTTGATCGTTTTGGAATGCTAGCCCCCGATGTCCTTGATGGTTCTGATGAGAAAAAGGCCGCTATGGCCATCTGTGATAAGATGGGCTTAAAAGGCTATCAAATGGGAAAAACAAAGGTATTTCTCAGAGCAGGTCAGATGGCTGAAATGGATGCACGAAGAGCCGAAGTCTTAGCTAAAGCAGCTAAACTCATTCAGAGACAAATCCGAACACATTTAACCAGAAAGGAGTTCATCACCCTAAGAAAGGCCACAATATATATCCAGAAGATGTGGAGAGCTAAACTTGCGCGTGAACTCTATGAACATATGAGGAGGGAAGCAGCTTCTATCCGGATACAGAAACATGCGCGTGCACACAGAGCAAGAATGTACTATACATCATTACAAGTATCAGCTATAGTTCTTCAATCAGGCTTGAGAGCATTTGCAGCACGAAATGAATATAGGTACAGAAGAAGAACAAAGGCTTCAACGAAAATTCAGACACAATGGAGAAAAGTTCAAGCTCTTTCTGATTACAAACAACAGAAGAAAGCAACTGTTTCACTTCAATGTCTTTGGAGAGCTAGAATTGCAAGGAAAGAGCTCCGAAAGCTTCGGATGGCTGCAAGAGAAACTGGGGCACTTAAGGAGGCAAAGGACAAGCTGGAGAAGCGTGTTGAGGAGCTTACATGGAGAATAGATATTGAAAAGCACATGAGGATGGATCTTGAAGAAGCTAAAGGGCAAGAGATTGCAAAATTGCAAAATGCATTACAAGAAATGCAAGCTCAGCTAGATGAAGCCCAGGCAGCAATTATACATGAGAGAGAAGCAGCAAAAATAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTACCTGTTGTGGACGATACAAAGCTAGAGTTACTGACAAATAAAAATGAGGAGCTGGAGACTGAAGTGGAAGAGCTTAACAAGAAGATTAAAGAGTTTGAAGAGAAGTTCTCAAAAATTGAAAACGAGAATCAATCAAGGGTGAAAGAGGCGGAAGAAGCACAGCTTAAAGCAACACAACTTCAGGAGACCATTGAAAGATTAGAATTGAGTTTGTCAAACCTGGAGTCTGAGAACCAGGTTCTATGCCAGCAGGCTTTGGAAGAATCAAAAAATGAAGAACTCTTTGAAGAGATCAAAATCCTCAAGGGTCAGATAGCAAATCTAGAATCAGAGAATGAATCCCTACGGAGCCAGGCAGCAGCAGCAGCTGCTTTAGAGCAGAAAGTCCATCCAGAGAAAATAGAAACAGACCATTCAGCAGCTGCTTTAGAGCAGAAAGTTCATCCAGAAAAAAATGAACCAGAACCTGAAGTTGCTGTTGTAGAGAAGATCAAAGTGCAACCAAGAGTTATTGCAGATAATGTGACTGCCCAAATCAAGAATTTGGATAATGGCATTCATACAGAGGAAGAATTGCATTCAAGAAAAGAACCAAAAGCACCGGTCTTCTTGCTTACTAAACAAAGATCACTCACAGACAGACAGCAGGAAAGTCATGATGCACTGCTCAAGTGTCTCGCTGAAGATAAGCGATTTGAGAAAAACAGACCAGCAGCTGCTTGTATTGTATACAAAGCACTTCTTCATTGGAGATCCCTTGAAGCAGAAAAAACACATATTTTTGATAAAATTACACACACTATCCGATCATCTATAGAGAGTCAAGAAGGAATCCATGATCTAGCCTACTGGCTTTCAACTATTTCAACACTTCTGTTTTATCTACAATGCACAATGAAGGCCAGCAATACAACTAAGGCAGTGTCACGTAATCGAAACTCCCCTGCCACTTTGTTTGGAAAAATGGCACAAGGTTTGCGTTCATCTTCAATGGGCTTGGGGATTTCAAGTGGCTACAGTGGAATGGTGGAGAAGCCAAATGATCAGTCTAAAGTAGAAGCCAAATATCCAGCTATTCTGTTTAAGCAGCATTTAACTGCATATGTGGAAAAGATATATGGAATGATCCGTGATAGTCTAAAGAAAGAGATTAGCCCATTCTTAAATTTGTGTATACAGGCACCAAGATCCATAAGAACTAGATCTATAAGAGGATCATCCAGAAACATCCATTCAAATATTGTTGCAAAACAGCAAGCATTACATATGTACTGGAAGGGAATCGTGGACAAGTTAGATCATGCCTTGCGTATATTGTCCGATAACTATGTCCCTCCCATCATTACAAGAAAGATATTTAGTCAGGTTTTCTCATTCATGAATATCCAGCTATTTAATAGTTTGTTGCTTCGTCGTGAGTGCTGTTCCTTTAGCAATGGAGAATATTTGAAGGCAGGATTGCATGAGTTGGAACTATGGTGTCTTAAAGCAACAGACCAGTTTGCTGGTTCATCTTGGGATGAACTCAAACATATACGCCAAGCTGTGGGATTTCTGGTTTTGCATCAAAAGACTCAAAAATCTTTAGAGGAAATCACGAATGAGCTATGCCCGGGGTTAAGTATTCCACAAATATATCGTATTGGAACTATGTTCTGGGATGACAAGTATGGGGCACAGGGATTATCTGCAGAAGTCATTAGCAGAATGAGAGTGATTATGACAGAAGACTCAATAAGCATACATCATAGCTCATTCCTTCTAGAGGTGGATTCCAGCATACCATTCTTGATGGAGGAGATGTTTCGGTCCATGAGTGACATCCGCCTATCAGACATGGATGTGGATCCACCACCAATACTCAGGCAAAGGTCTGACTTCCATTTCTTGTTGCAACAAATGGACAGTGACTCTCAGTCTGAAGTTGTTCAACAGAAGAAAAAAATTGAGAAACCTACTGGAAGGGAGAAATTCTTGAATGCTGTTATTTCAGGGTTCCCATGA 4686 0.4063 MVADISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLATRFSLNEIYQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSATEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDAKKYKLGDPRQFHYLNQSNCYEVSNVDDAKEYLETKNAMDIVGINQEEQDAIFRVVAAILHLGNIDFVKGKEVDSSKLKDDKSLFHLQTAAELFMCDAKALEDSLCKRVIVTPDGNITKPLDPDAAALSRDALSKTVYSKLFDWIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKSHKRFSKPKLARTDFTINHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCPFVANLFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPDVLDGSDEKKAAMAICDKMGLKGYQMGKTKVFLRAGQMAEMDARRAEVLAKAAKLIQRQIRTHLTRKEFITLRKATIYIQKMWRAKLARELYEHMRREAASIRIQKHARAHRARMYYTSLQVSAIVLQSGLRAFAARNEYRYRRRTKASTKIQTQWRKVQALSDYKQQKKATVSLQCLWRARIARKELRKLRMAARETGALKEAKDKLEKRVEELTWRIDIEKHMRMDLEEAKGQEIAKLQNALQEMQAQLDEAQAAIIHEREAAKIAIEQAPPVIKEVPVVDDTKLELLTNKNEELETEVEELNKKIKEFEEKFSKIENENQSRVKEAEEAQLKATQLQETIERLELSLSNLESENQVLCQQALEESKNEELFEEIKILKGQIANLESENESLRSQAAAAAALEQKVHPEKIETDHSAAALEQKVHPEKNEPEPEVAVVEKIKVQPRVIADNVTAQIKNLDNGIHTEEELHSRKEPKAPVFLLTKQRSLTDRQQESHDALLKCLAEDKRFEKNRPAAACIVYKALLHWRSLEAEKTHIFDKITHTIRSSIESQEGIHDLAYWLSTISTLLFYLQCTMKASNTTKAVSRNRNSPATLFGKMAQGLRSSSMGLGISSGYSGMVEKPNDQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSIRTRSIRGSSRNIHSNIVAKQQALHMYWKGIVDKLDHALRILSDNYVPPIITRKIFSQVFSFMNIQLFNSLLLRRECCSFSNGEYLKAGLHELELWCLKATDQFAGSSWDELKHIRQAVGFLVLHQKTQKSLEEITNELCPGLSIPQIYRIGTMFWDDKYGAQGLSAEVISRMRVIMTEDSISIHHSSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRQRSDFHFLLQQMDSDSQSEVVQQKKKIEKPTGREKFLNAVISGFP 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01555 1561 Gene3D - 715 761 - -
Vimu4g01555 1561 Gene3D - 762 811 - -
Vimu4g01555 1561 Gene3D - 662 714 - -
Vimu4g01555 1561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 812 IPR027417 -
Vimu4g01555 1561 Gene3D Kinesin motor domain 2 51 IPR036961 -
Vimu4g01555 1561 Gene3D Kinesin motor domain 52 596 IPR036961 -
Vimu4g01555 1561 Pfam DIL domain 1346 1449 IPR002710 -
Vimu4g01555 1561 CDD MYSc_Myo11 32 649 IPR036018 -
Vimu4g01555 1561 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Vimu4g01555 1561 ProSiteProfiles Myosin motor domain profile. 49 661 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01555 1561 ProSiteProfiles IQ motif profile. 664 691 IPR000048 GO:0005515
Vimu4g01555 1561 Gene3D - 182 237 - -
Vimu4g01555 1561 FunFam Myosin 2 242 359 - -
Vimu4g01555 1561 SMART DIL_2 1345 1452 IPR002710 -
Vimu4g01555 1561 SMART MYSc_2a 12 662 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01555 1561 FunFam unconventional myosin-Va 666 714 - -
Vimu4g01555 1561 Pfam IQ calmodulin-binding motif 688 707 IPR000048 GO:0005515
Vimu4g01555 1561 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Vimu4g01555 1561 Pfam IQ calmodulin-binding motif 666 684 IPR000048 GO:0005515
Vimu4g01555 1561 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Vimu4g01555 1561 Pfam IQ calmodulin-binding motif 714 732 IPR000048 GO:0005515
Vimu4g01555 1561 CDD MyosinXI_CBD 1107 1493 IPR037975 GO:0007015
Vimu4g01555 1561 SMART iq_5 663 685 IPR000048 GO:0005515
Vimu4g01555 1561 SMART iq_5 711 733 IPR000048 GO:0005515
Vimu4g01555 1561 SMART iq_5 782 804 IPR000048 GO:0005515
Vimu4g01555 1561 SMART iq_5 686 708 IPR000048 GO:0005515
Vimu4g01555 1561 SMART iq_5 759 781 IPR000048 GO:0005515
Vimu4g01555 1561 SMART iq_5 734 756 IPR000048 GO:0005515
Vimu4g01555 1561 FunFam Myosin heavy chain 182 237 - -
Vimu4g01555 1561 FunFam unconventional myosin-Va 763 810 - -
Vimu4g01555 1561 ProSiteProfiles Dilute domain profile. 1156 1470 IPR002710 -
Vimu4g01555 1561 PANTHER MYOSIN 10 1458 - -
Vimu4g01555 1561 Gene3D Myosin VI head, motor domain, U50 subdomain 238 349 - -
Vimu4g01555 1561 Gene3D - 371 553 - -
Vimu4g01555 1561 Coils Coil 902 978 - -
Vimu4g01555 1561 Coils Coil 806 879 - -
Vimu4g01555 1561 ProSiteProfiles IQ motif profile. 735 764 IPR000048 GO:0005515
Vimu4g01555 1561 PRINTS Myosin heavy chain signature 126 153 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01555 1561 PRINTS Myosin heavy chain signature 79 104 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01555 1561 PRINTS Myosin heavy chain signature 412 440 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01555 1561 PRINTS Myosin heavy chain signature 359 387 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01555 1561 Gene3D - 597 659 - -
Vimu4g01555 1561 FunFam Class V myosin 369 508 - -
Vimu4g01555 1561 FunFam unconventional myosin-Va 715 762 - -
Vimu4g01555 1561 Pfam Myosin head (motor domain) 49 649 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01555 1561 Coils Coil 985 1022 - -
Vimu4g01555 1561 ProSiteProfiles IQ motif profile. 687 716 IPR000048 GO:0005515
Vimu4g01555 1561 ProSiteProfiles IQ motif profile. 712 738 IPR000048 GO:0005515
Vimu4g01555 1561 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Vimu4g01555 1561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 715 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01555 Vimu-Chr4 16503814 16514930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01555 49 1528 Myosins gene family AT2G31900 72.335 0.0 2219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01555 K10357 - gmx:100817933 2743.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01555 4 16503814 16514930 Vimu4g01555 4 16503814 16514930 ECH