Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01553 ATGTCTCCAAAAGCTAAGTCAAGAAGCGGCGGTCTATACCTTTTTATTGGATTTTTGTTTAATATTGATAGCGGCAAAGCAGAGCTACAGCAAGGCATAGGATTCCCATACTGGTTGATGAAGCCAAAAATATTAATGTTACATGCAGTGTTCGTAAAGTTCGTCTGCGTGGTTGACCAGTTAGCAGAGTCAAAACCCTGCAGACAGTACAAAATGATGCCAAGCAATGGACAGTTAACAGTTCCTCCTGGCTTCAGGTTCCACCCTACCGATGAAGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATAAGAGAAGTGGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGACAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTACTTCTTTAGCCACAAGGATAAGAAATACCCAACAGGAACAAGAACAAATCGAGCAACTACAGCAGGATTTTGGAAAGCAACTGGAAGAGACAAGGCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATGTTCAGGAAGATGGGTGGGTGGTATGCAGGGTTTTCAAAAAGAAAAACCAAAATCGAGGTTTCCAGCAAGAAATTGAAGAAGAAGAGAACTTAACCCACATGAGAACAAGTGGTCCTTGCCATGTTCTGGAGCCAAAACATCATATGCAAGGAGGGTTATATGACTACAACTTTGATGGCACAATGCAGCTTCCACAGTTATTCAGTCCAGAATCAGCTGTTGCACCAAGCAGTAGTTGCTTGGCCACATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACCACTAGTGGCTGTGGACTGAATCTTATGCAACAACAGGGAGAGAGATTCAGTGGTGATTGGTCATTCTTGGACAAGCTACTAGCATCTCACCATGCCATGGATCATCAGCATCATCCACAAAGCAAATGTAACCCTCCCACTCACCAAGCTGCAACTTCTGTTGCCTCTTCAGCTCAGAAATTCCCATTCCATTACCTTGGCTGTGACACCCATGATATCATGAAATTTTCTAAGTAG 1188 0.4377 MSPKAKSRSGGLYLFIGFLFNIDSGKAELQQGIGFPYWLMKPKILMLHAVFVKFVCVVDQLAESKPCRQYKMMPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEENLTHMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAVAPSSSCLATSMNAMDILECSQNLLRLTTSGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAATSVASSAQKFPFHYLGCDTHDIMKFSK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01553 395 SUPERFAMILY NAC domain 69 230 IPR036093 GO:0003677|GO:0006355
Vimu4g01553 395 Gene3D NAC domain 90 235 IPR036093 GO:0003677|GO:0006355
Vimu4g01553 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 80 331 - -
Vimu4g01553 395 FunFam NAC domain-containing protein 90 234 - -
Vimu4g01553 395 ProSiteProfiles NAC domain profile. 81 230 IPR003441 GO:0003677|GO:0006355
Vimu4g01553 395 Pfam No apical meristem (NAM) protein 82 210 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01553 Vimu-Chr4 16465933 16473914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01553 77 395 NAC Transcription Factor Family AT1G79580 52.660 2.78e-115 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01553 NAM 3.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01553 - - vun:114178728 661.759