Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g01543 | ATGAGACACAATGTGTCAGAAGAGGCACACCCTAGTGTTCATAGCAGTTGTGCAAAGTCAGGAAAGAACTCACCAACTCATCACAATAATGTGAACCAAGCAGAAAAAGAGACCTTCAGAGCAGCAAATGTCCACACTTCAGGAAGGGAAACTGGACAATTAGACCATGTTTCAAAATCTGATAATGCAAAGTTGGAAGGTAAATCAAGACCCCAGAGGCTAATTCCACCAAACAGGAATATCTCTGACTTCAACCCTCAACAACACCAAAGTCCAAGCACAACGAAAAAGCCTGTTCAAAACCCTGATCACCATCATTCAAAGACAGTGTCTGTGTCAACCCCACATGGAAAGACCTCGAATCATGGGAGTACTGGTTCTCGCAGTAACAGCTTAGAGAGCACAAGTGCACACATTAGGCCGCATACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGGTTTCAAAGTGTGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACCAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTCCCAACTTTGTATTCTTACTTTGAAACTGAGAAGTTTTACTGTCTGGTGATGGAGTTTTGTAGTGGAGGTGATCTTCATACTCTTCGACAGAAGCAACCTAACAAGTGCTTCTCTGAAGAAGCTGCCAGGTTTTATGCCTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAGGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTTGTCAAATCTTCATCTGCCCATGCAACCAACAATAGTGGTGGCAACAGTGACTCCAGTGGCGTACTAAATGATGACCAAGCAAGCACTACTCAAGCGTCTAGTTTTTTTCCGCGCATTTTACCTTCAAAGAAGAACCGCAAGGCAAAGTCAGATTTTGGCCTATTGGTTGGTGGAGCACGCCTTCCTGAACTGATGGCAGAACCTACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGAATCTTCTTGTATGAGCTGTTGCATGGATCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAGGTCAGTGCAGTGGCTCGTGACCTTATTAGGGGATTGCTTGTGAAAGAGCCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACGGAGATAAAACAGCACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTCAGAAGTGCCACACCTCCTCACATACCAGATACTATAGACTTCAGCAAGTATGCCAGCAAAGACACACCACCCCCGGTGGACAAGAAGATGGCAGATATTGCTAATGATAAACACAGCCATAATGCTAGTGATTCTTACGTAGATTTTGAGTATTTTTAG | 1677 | 0.449 | MRHNVSEEAHPSVHSSCAKSGKNSPTHHNNVNQAEKETFRAANVHTSGRETGQLDHVSKSDNAKLEGKSRPQRLIPPNRNISDFNPQQHQSPSTTKKPVQNPDHHHSKTVSVSTPHGKTSNHGSTGSRSNSLESTSAHIRPHTGGDVRWEAINMVSKCGPLNLSHFRLLKRIGYGDIGSVYLVDLKGTKTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKFYCLVMEFCSGGDLHTLRQKQPNKCFSEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHATNNSGGNSDSSGVLNDDQASTTQASSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGSTPFKGAGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPDTIDFSKYASKDTPPPVDKKMADIANDKHSHNASDSYVDFEYF | 558 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g01543 | 558 | MobiDBLite | consensus disorder prediction | 1 | 143 | - | - | |
Vimu4g01543 | 558 | Gene3D | Phosphorylase Kinase; domain 1 | 164 | 249 | - | - | |
Vimu4g01543 | 558 | PANTHER | FLIPPASE KINASE 1-RELATED | 27 | 524 | - | - | |
Vimu4g01543 | 558 | MobiDBLite | consensus disorder prediction | 105 | 138 | - | - | |
Vimu4g01543 | 558 | Gene3D | Transferase(Phosphotransferase) domain 1 | 392 | 516 | - | - | |
Vimu4g01543 | 558 | Pfam | Protein kinase domain | 389 | 498 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g01543 | 558 | Pfam | Protein kinase domain | 167 | 320 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g01543 | 558 | ProSiteProfiles | Protein kinase domain profile. | 166 | 498 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g01543 | 558 | SMART | serkin_6 | 166 | 498 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g01543 | 558 | FunFam | Serine/threonine-protein kinase D6PK-like | 164 | 249 | - | - | |
Vimu4g01543 | 558 | MobiDBLite | consensus disorder prediction | 326 | 347 | - | - | |
Vimu4g01543 | 558 | CDD | STKc_phototropin_like | 164 | 519 | - | - | |
Vimu4g01543 | 558 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 287 | 299 | IPR008271 | GO:0004672|GO:0006468 | |
Vimu4g01543 | 558 | MobiDBLite | consensus disorder prediction | 10 | 51 | - | - | |
Vimu4g01543 | 558 | SUPERFAMILY | Protein kinase-like (PK-like) | 163 | 522 | IPR011009 | - | |
Vimu4g01543 | 558 | MobiDBLite | consensus disorder prediction | 75 | 98 | - | - | |
Vimu4g01543 | 558 | MobiDBLite | consensus disorder prediction | 52 | 68 | - | - | |
Vimu4g01543 | 558 | Gene3D | Transferase(Phosphotransferase) domain 1 | 250 | 319 | - | - | |
Vimu4g01543 | 558 | FunFam | Serine/threonine-protein kinase AGC1-7 | 391 | 516 | - | - | |
Vimu4g01543 | 558 | FunFam | serine/threonine-protein kinase D6PK-like | 250 | 317 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g01543 | Vimu-Chr4 | 16307497 | 16309558 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g01543 | 132 | 558 | AGC Kinase Gene Family | AT1G79250 | 71.239 | 0.0 | 653 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | AGC_RSK-2 | Vimu4g01543 | Pkinase | 2.9e-37 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g01543 | - | - | gmx:100784301 | 950.273 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu4g01543 | 4 | 16307497 | 16309558 | Vimu5g00847 | 5 | 10970604 | 10971419 | PCT |