Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01543 ATGAGACACAATGTGTCAGAAGAGGCACACCCTAGTGTTCATAGCAGTTGTGCAAAGTCAGGAAAGAACTCACCAACTCATCACAATAATGTGAACCAAGCAGAAAAAGAGACCTTCAGAGCAGCAAATGTCCACACTTCAGGAAGGGAAACTGGACAATTAGACCATGTTTCAAAATCTGATAATGCAAAGTTGGAAGGTAAATCAAGACCCCAGAGGCTAATTCCACCAAACAGGAATATCTCTGACTTCAACCCTCAACAACACCAAAGTCCAAGCACAACGAAAAAGCCTGTTCAAAACCCTGATCACCATCATTCAAAGACAGTGTCTGTGTCAACCCCACATGGAAAGACCTCGAATCATGGGAGTACTGGTTCTCGCAGTAACAGCTTAGAGAGCACAAGTGCACACATTAGGCCGCATACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGGTTTCAAAGTGTGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACCAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTCCCAACTTTGTATTCTTACTTTGAAACTGAGAAGTTTTACTGTCTGGTGATGGAGTTTTGTAGTGGAGGTGATCTTCATACTCTTCGACAGAAGCAACCTAACAAGTGCTTCTCTGAAGAAGCTGCCAGGTTTTATGCCTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAGGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTTGTCAAATCTTCATCTGCCCATGCAACCAACAATAGTGGTGGCAACAGTGACTCCAGTGGCGTACTAAATGATGACCAAGCAAGCACTACTCAAGCGTCTAGTTTTTTTCCGCGCATTTTACCTTCAAAGAAGAACCGCAAGGCAAAGTCAGATTTTGGCCTATTGGTTGGTGGAGCACGCCTTCCTGAACTGATGGCAGAACCTACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGAATCTTCTTGTATGAGCTGTTGCATGGATCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAGGTCAGTGCAGTGGCTCGTGACCTTATTAGGGGATTGCTTGTGAAAGAGCCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACGGAGATAAAACAGCACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTCAGAAGTGCCACACCTCCTCACATACCAGATACTATAGACTTCAGCAAGTATGCCAGCAAAGACACACCACCCCCGGTGGACAAGAAGATGGCAGATATTGCTAATGATAAACACAGCCATAATGCTAGTGATTCTTACGTAGATTTTGAGTATTTTTAG 1677 0.449 MRHNVSEEAHPSVHSSCAKSGKNSPTHHNNVNQAEKETFRAANVHTSGRETGQLDHVSKSDNAKLEGKSRPQRLIPPNRNISDFNPQQHQSPSTTKKPVQNPDHHHSKTVSVSTPHGKTSNHGSTGSRSNSLESTSAHIRPHTGGDVRWEAINMVSKCGPLNLSHFRLLKRIGYGDIGSVYLVDLKGTKTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKFYCLVMEFCSGGDLHTLRQKQPNKCFSEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHATNNSGGNSDSSGVLNDDQASTTQASSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGSTPFKGAGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPDTIDFSKYASKDTPPPVDKKMADIANDKHSHNASDSYVDFEYF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01543 558 MobiDBLite consensus disorder prediction 1 143 - -
Vimu4g01543 558 Gene3D Phosphorylase Kinase; domain 1 164 249 - -
Vimu4g01543 558 PANTHER FLIPPASE KINASE 1-RELATED 27 524 - -
Vimu4g01543 558 MobiDBLite consensus disorder prediction 105 138 - -
Vimu4g01543 558 Gene3D Transferase(Phosphotransferase) domain 1 392 516 - -
Vimu4g01543 558 Pfam Protein kinase domain 389 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01543 558 Pfam Protein kinase domain 167 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01543 558 ProSiteProfiles Protein kinase domain profile. 166 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01543 558 SMART serkin_6 166 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01543 558 FunFam Serine/threonine-protein kinase D6PK-like 164 249 - -
Vimu4g01543 558 MobiDBLite consensus disorder prediction 326 347 - -
Vimu4g01543 558 CDD STKc_phototropin_like 164 519 - -
Vimu4g01543 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vimu4g01543 558 MobiDBLite consensus disorder prediction 10 51 - -
Vimu4g01543 558 SUPERFAMILY Protein kinase-like (PK-like) 163 522 IPR011009 -
Vimu4g01543 558 MobiDBLite consensus disorder prediction 75 98 - -
Vimu4g01543 558 MobiDBLite consensus disorder prediction 52 68 - -
Vimu4g01543 558 Gene3D Transferase(Phosphotransferase) domain 1 250 319 - -
Vimu4g01543 558 FunFam Serine/threonine-protein kinase AGC1-7 391 516 - -
Vimu4g01543 558 FunFam serine/threonine-protein kinase D6PK-like 250 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01543 Vimu-Chr4 16307497 16309558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01543 132 558 AGC Kinase Gene Family AT1G79250 71.239 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu4g01543 Pkinase 2.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01543 - - gmx:100784301 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01543 4 16307497 16309558 Vimu5g00847 5 10970604 10971419 PCT