Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01539 ATGGCCGCTGCCGACTCCTCCACCGCCGCTCCTTTACGCCAGCTCTCGCAGAAGGAGACGGACATCCAGATGATGCTCGCCGCGGATGTGCATCTCGGCACGAAAAACTGCGACTTCCAAATGGAACGCTACGTCTTCAAGCGCCGCACTGACGGTATATACATAATTAACCTTGGCAAAACATGGGAGAAGCTCCTTCTTGCTGCTAGGATAATTGTTGCCATTGAGAACCCACAAGATATCATTGTTCAGTCCGCCAGGCCTTATGGTCAGAGGGCAGTGCTTAAATTTGCTCAGTACACCGGGGCTCATGCAATTGCAGGAAGGCACACTCCTGGAACATTCACCAATCAGATGCAGACATCCTACAATGAGCCTCGTCTTCTAATTCTCACTGATCCAAGAACAGATCATCAGCCTATTAAGGAAGGTGCTCTTGGCAACATTCCCACTATTGCCTTTTGTGACACTGACTCTCCAATGCGGTATGTTGACGTTGGGATTCCGGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTGTTTTGGCTTTTAGCTCGTATGGTGCTGCAGATGCGGGGTACTATTCGTCCGGGTCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAAGCTAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTTTGCCATTGATTTCAATGATACTGGCATTAGCAGCTTCCCTGCCGACAGACAATGGCCTACTGCACTCGATCAACCCTGGACAGATGACGCTCCACAACCAATTCCGGTAGTTCCTACTAACTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGTGAGGCTGTTCCTGCACCGGTTCCCGCCGCCGTACCGGCTCCACAAGTTGGTGTGCCTCCAGCTCAAACTTTTCCTGCTCCTGGCTGGGACTAG 942 0.5074 MAAADSSTAAPLRQLSQKETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLLLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDFAIDFNDTGISSFPADRQWPTALDQPWTDDAPQPIPVVPTNWTPETAAAGDWGEAVPAPVPAAVPAPQVGVPPAQTFPAPGWD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01539 313 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 NCBIfam 30S ribosomal protein S2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vimu4g01539 313 Gene3D - 21 226 - -
Vimu4g01539 313 PANTHER 40S RIBOSOMAL PROTEIN SA 13 291 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vimu4g01539 313 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Vimu4g01539 313 FunFam 40S ribosomal protein SA 21 227 - -
Vimu4g01539 313 Hamap 40S ribosomal protein SA [rps-0]. 9 252 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vimu4g01539 313 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu4g01539 313 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01539 Vimu-Chr4 16272451 16274821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01539 1 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.414 5.37e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01539 K02998 - gmx:100786575 542.732