Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01529 ATGGAGATATTATCACAAATGTGGTCTCTGTTAGGGTTACTCACCGTGCTCCAAAACGTTCTGCCATCCCAGCTTCTCTCATTGCTCCATTCCATATACGAATCTCTGCAAGATCTGCTTTCTCCATATTCCTATTTCGAGATTCCAGAGTTCAACGGCTACTGCGGCGTCGACCTCAACGACCTCTACCGCCACGTGCACCTCTACCTCAACGCCGCGAACCACGCCCCCGGCGCCGCGTGCCGCCGGTTAACGCTCTCCCGCTCGCCTTCTTCGAACCGCATCTCCTTCGCCGTCGCCCCGAACCACACCGTCCACGACGCCTTCCGTGGCCAACGCGTCACATGGACTCACCACGTTGAGACCGCGCAGGACTCACTCGAGGAGAAGCGCAGCTTTACACTCCGCCTCCCGAAGCGCCACCGCCACGCGCTCCTCTCTCCCTACCTATCCCACGTCACCGCACGCGCCGAGGAGTTCGAGCGCGTCTCGCGAGAGCGTAGACTCTTCACCAACAATACCACCGGGTCGGGCTCCTTCGAATCGGGATGGGTTTCCGTCCCCTTCCGTCACCCGTCCACCTTCGAGACCCTCGCCCTCGAGCCCGAACTGAAAAGACAAATAAAAAACGACTTAACGGCTTTCGCTGACGGCAAAGAGTTTTACAATCGAGTGGGCCGGGCCTGGAAACGTGGGTATTTACTCCACGGCCCACCCGGGTCGGGTAAATCGAGTTTAATAGCCGCTATGGCAAATTTTCTCTGTTACGACGTTTACGACTTGGAACTAACCAAAGTCTCTGATAACTCCGAGTTACGGTCGTTACTGATCCAAACTACAAACCGTTCTATTATCGTTATCGAAGATATTGACTGTTCCGTTGACTTAACGGCAGACAGAACAACGAAGAAAACACAGGCAGCGAAATTGTCGAAGAGAAAGAAGTCTCAAACGGCGTCGTTCACGCGCTGCGAGGAGAGTGGGCGTGTGACGCTTTCGGGGCTTTTGAATTTCACCGACGGGTTATGGTCTTGCTGCGGTGACGAGAGGATTGTGGTGTTCACAACCAACCATAGGGATAGTGTGGACCCCGCGCTCGTGCGGTGTGGCCGAATGGACGTCCACGTCAGCCTCAACACGTGTGGGGTTCACGCGTTCCGCGAGCTCGCGCGAAACTACCTTGGCGTAGACTCGCACGTGCTGTTCGAGGCAGTTGAGGGTTGCATTCGCTCGGGTGGGTCTCTCACGCCCGCACACGTGGGAGAGATTTTGCTGCGGAATAGAGGAGATGCTGACGTGGCGATGAGGGAAGTGCTGGCGGCCATGCAGGGACGGATGCTGGCCGCTGCCGCCGTAGCTGACCAGGCGGAGAACGAGGACACGACGGTTGGAGTGAGGTCGCCGGAGAGCGTGCTGCTGATGGGGTCGCCGGAGAATTGGGATGCCTTGAGCGGAAAGAAGAGGAAGGAACAAAATGGGGGTAATAACAATTGGGATAAAAAGGTCAAGTTTTTCGTTAGGTTAAGGTCGTTGACCAGATCTGATCCTGGAAGATAA 1557 0.5594 MEILSQMWSLLGLLTVLQNVLPSQLLSLLHSIYESLQDLLSPYSYFEIPEFNGYCGVDLNDLYRHVHLYLNAANHAPGAACRRLTLSRSPSSNRISFAVAPNHTVHDAFRGQRVTWTHHVETAQDSLEEKRSFTLRLPKRHRHALLSPYLSHVTARAEEFERVSRERRLFTNNTTGSGSFESGWVSVPFRHPSTFETLALEPELKRQIKNDLTAFADGKEFYNRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVSDNSELRSLLIQTTNRSIIVIEDIDCSVDLTADRTTKKTQAAKLSKRKKSQTASFTRCEESGRVTLSGLLNFTDGLWSCCGDERIVVFTTNHRDSVDPALVRCGRMDVHVSLNTCGVHAFRELARNYLGVDSHVLFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVLAAMQGRMLAAAAVADQAENEDTTVGVRSPESVLLMGSPENWDALSGKKRKEQNGGNNNWDKKVKFFVRLRSLTRSDPGR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01529 518 Pfam ATPase family associated with various cellular activities (AAA) 234 377 IPR003959 GO:0005524|GO:0016887
Vimu4g01529 518 PANTHER BCS1 AAA-TYPE ATPASE 7 443 - -
Vimu4g01529 518 MobiDBLite consensus disorder prediction 476 498 - -
Vimu4g01529 518 MobiDBLite consensus disorder prediction 482 498 - -
Vimu4g01529 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 405 IPR027417 -
Vimu4g01529 518 Gene3D - 185 376 IPR027417 -
Vimu4g01529 518 SMART AAA_5 229 380 IPR003593 GO:0016887
Vimu4g01529 518 Gene3D - 377 450 - -
Vimu4g01529 518 CDD RecA-like_BCS1 208 376 - -
Vimu4g01529 518 ProSitePatterns AAA-protein family signature. 350 368 IPR003960 GO:0005524|GO:0016887
Vimu4g01529 518 Pfam Domain associated at C-terminal with AAA 21 119 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01529 Vimu-Chr4 16126249 16131740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01529 231 378 Calmodulin-binding Proteins AT3G56690 26.797 5.17e-08 53.9