Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01507 ATGGAGGTTGATCTGAATGAAGATTTGGATGGAATAAAAGAGCGACTGAGAAGGCTAGAAGGTGCAGCTTTTAGGGCAAGGCAACGTCAGAGGCGACGACTGAGTCATGCTCCGATTCAGATAGTTAACCAGGATGGAGAAGTGGTGACAGTTGCTCATCTTCAAGATGAAGAAACGGTGCCTGATGGTGATTTTGAAGGAGAAATTATACAAGAGACAGAGGGTAAAAGAAAGGCTAGTTATTTGGTTGCTGATGCACTGGGATTGAGAAACAATGAAGGTGATGGTTTTCCTGCAAAGTTTTTTCACTGTAATGTGTGCCTTGAGAGGGCAAAGGATCCTGTTTTGACTTGTTGTGGTCACTTGTTTTGTTGGCCTTGTTTTCACAAGTTGCCATTGATATTTACTTATCCAAAGGCAAAGGAATGTCCAGTTTGTGAAGGAGAGGTCACAGATGAAACTCTTACAACAATATATGGCAATTCTGATTTCCATGACAGTGGCAACTTGAAAGTTGATGAACCAAGTCATGAAATTCCTCCCAGACCTTGTTCAAGGAGAGTTGAGAGCATTAGGCAGCAACTCAGAAATTGA 594 0.4209 MEVDLNEDLDGIKERLRRLEGAAFRARQRQRRRLSHAPIQIVNQDGEVVTVAHLQDEETVPDGDFEGEIIQETEGKRKASYLVADALGLRNNEGDGFPAKFFHCNVCLERAKDPVLTCCGHLFCWPCFHKLPLIFTYPKAKECPVCEGEVTDETLTTIYGNSDFHDSGNLKVDEPSHEIPPRPCSRRVESIRQQLRN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01507 197 Coils Coil 2 29 - -
Vimu4g01507 197 SUPERFAMILY RING/U-box 103 152 - -
Vimu4g01507 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 163 IPR013083 -
Vimu4g01507 197 Pfam zinc-RING finger domain 103 147 IPR001841 -
Vimu4g01507 197 ProSiteProfiles Zinc finger RING-type profile. 104 147 IPR001841 -
Vimu4g01507 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 70 194 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vimu4g01507 197 SMART ring_2 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01507 Vimu-Chr4 15867813 15868406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01507 46 196 C3H Transcription Factor Family AT3G58030 37.086 4.80e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01507 - - gmx:100780540 197.593