Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01506 ATGGAACTTGGTTTGAGCTTAGGAGAATCTTCAAGGCCTTTGCTTAGTTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCACGTTATCAATTGGGCCAGTCATCACTACACGAAAGGATCAGCAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAGAAGAAACAAAGCCAAAGAGCAACAACAACATCAACACTCGCACAACAGAAGATCCTTCCGAACCCAATAACAACAACAACAACCCAGTTCTGCATCAGCTCGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAATGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCCAGGGGCTTGGACGTGAACGCGCAGCCGCCGCAGGCGGAGGATGAGGCAGAGGAGGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGAAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAGGATGATAACAACGGCAGCGGTGGCAACGGCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGCCAAGTAGAAGTGTGGTTTCAAAACCGAAGGGCAAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAAAGGTGTTGTGAAACACTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCTTTCTATATGCAATTACCAGCGACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCAGAGTGCTCCTAATGCCACCATCAATGCTAATTCAGGAGCAATGACCATTGTCAAAAGCAGTGCCACCAACAATGACTCACCCTCCAAAGCCATTGGATTCCCATTTGGTAAACCCAGGTTTCATCCATTTGTCCACACTACCCAACAACCCCATCAACACCAATCTCCATCATCTTGA 1146 0.4642 MELGLSLGESSRPLLSFMEKPREASNQLGLGFSTTLSIGPVITTRKDQQDEQEEFEEEEEEETKPKSNNNINTRTTEDPSEPNNNNNNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPQAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASSRASDEDDNNGSGGNGRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKSSNPFYMQLPATTLTMCPSCERVATNSTSTSSSQSAPNATINANSGAMTIVKSSATNNDSPSKAIGFPFGKPRFHPFVHTTQQPHQHQSPSS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01506 381 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 70 329 - -
Vimu4g01506 381 CDD homeodomain 199 256 IPR001356 GO:0003677
Vimu4g01506 381 Coils Coil 41 61 - -
Vimu4g01506 381 Pfam Homeobox associated leucine zipper 255 289 IPR003106 GO:0006355|GO:0043565
Vimu4g01506 381 MobiDBLite consensus disorder prediction 22 149 - -
Vimu4g01506 381 Coils Coil 268 291 - -
Vimu4g01506 381 MobiDBLite consensus disorder prediction 68 93 - -
Vimu4g01506 381 FunFam Homeobox-leucine zipper protein 18 182 260 - -
Vimu4g01506 381 SUPERFAMILY Homeodomain-like 185 256 IPR009057 -
Vimu4g01506 381 MobiDBLite consensus disorder prediction 177 203 - -
Vimu4g01506 381 SMART halz 255 298 IPR003106 GO:0006355|GO:0043565
Vimu4g01506 381 Gene3D - 203 253 - -
Vimu4g01506 381 SMART HOX_1 197 259 IPR001356 GO:0003677
Vimu4g01506 381 MobiDBLite consensus disorder prediction 342 381 - -
Vimu4g01506 381 Pfam Homeodomain 199 253 IPR001356 GO:0003677
Vimu4g01506 381 ProSiteProfiles 'Homeobox' domain profile. 195 255 IPR001356 GO:0003677
Vimu4g01506 381 MobiDBLite consensus disorder prediction 27 45 - -
Vimu4g01506 381 ProSitePatterns 'Homeobox' domain signature. 230 253 IPR017970 GO:0000981|GO:0006355
Vimu4g01506 381 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01506 Vimu-Chr4 15811626 15814057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01506 122 311 Homeobox Transcription Factor Family AT3G60390 59.799 1.37e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu4g01506 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01506 K09338 - gmx:100778742 496.893