Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01498 ATGGAAAACCACCAAAACCACAGGGGAGAGGCAGAACCTGACAGAGAAAACAACCAAAACCAAAACAATAACCAGGTGTGGGGCACGTGGGAGGAGTTGTTGCTAGCGTTTGCTGTCAACCGCCATGGATTCAAGGACTGGGACACCGTCGCCATGGAGGTTCAGTCGCGCGCCACGCGCCTCCTCGCCACGGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAGCCGCCGATTCGCCGACCAATGCAACGACGGTCTTACGCCGCCGCAACAGGACGCCGAAGCCGCCGGGGACAACTCCGATCACGTCCCGTGGCTCGACGAATTGCGTAAACTCCGTGTCGCCGAGCTCCGCCGCGAGGTCCAGCGGCGCAACGATTCCATTCTGTCGCTGCAGTTGGAGGTGAAGAGGCTGGAGGAGGAGAAAACGAAAGAGAATGACGGTAAAGACGACCAGAAACCAGATCTGGCGGTTCCCGGCGAAGTGCGGCCGGAAAACGACAAAACCGGCGGAGAAGTTGAAGAGGTTGGACCGGCTAATTCCGGACCGGAGAGAACCGCAAACGCTGACAAGATGTTGCCAACAACGGGCGACGAATCGGACCGGGAGAATCAATCAGTTAACGAGTCTAACTCGACCGGTTCGAGGTTTGATAAAACCGGAGAAGGTGATGCAAAGTTAAGAATCGAACCGGATCCGGTTCAGACCGGTTCAAAAGAAGTGGACCCGGTTGCGAGGAAGGGAAAACCGGTTGGGGAGGAATCGAATAATGGTAGCTACGATGCCTTGGCGAAGGTGCCAACGTGTGAGTCGGTGCCTCCTAGTGACGAGAGAAAGGTGGAGCAGGATGATGACTCGTCTGAGTTGCACGACTCGGTGGCTCACTCCGGGGAGGGAGGGACGAGGGAGAGCAGCGAAGTGCAGAGCTCAGCCAGCTTGACGCGGAAGAGGAAGACGCGGCGTAGAAAAGATGTTTCCGGCAGCGACGGTCGTGGAGGCGGCACTTCTACACTGCCGGAGAATGAAGAGGTAACGATGGTCAAATCAGAACCGTTGGTTGGTATTTTGGAGTTAATCAAGGGACATGAACACTGTTCATTAATCGAGAGTCGACTTGAGAGCCAGCTGGAGTCGGACAGATACAAAGACATAGTGAAACAGCCACTGGACATGGAAACCATACAATTAAGAATCCAGAAAGGTCAGTATTTCTCATGCACTAGTGCATTCTTCCGCGACCTCCTCCTCCTCTTCACCAACGCCACCGTCATCTTCCCCCATGACTCTCCGGAGTCACAGGCGGCACGGCAGCTGCACCGCCTTGTCACCACCGAGATGAAGAACCACGCCCAAACACAATCAGACCCTATCCCCCGGAAGAGCGATTCACTCCCTCCAAACATACCACTAGCCAAACCAGATTCTCTCTTGTCCAAGAACAAAGCCTCTGGTCCCATATTGGTTTGCCGCAAACGCAGTTCAATGTTAGCGAAACCTTCCTCGACCACTTTTGGCCAAAAGAATGACCAACCCATCTTCAACGACAAGAAGGAAAGGGCACCTTCTGATTCAAAACCTCCTACGAAACCTTCTTCTGATACAGACGAAGAAGAGCCCCCCAAGGCCAAGGAGAAGCCTGTCACTGGAGTGAGAAGCCTGAGAAGGAGCAACAAGAACCTCAACAATAAGAAACTTTCCTCCAACTCCACTCCTAAAGCAGGGTCCTCGGGTAACAAGCCATCGGAGAGTCTTAAACCAGAGAAGAGTAAAGCGGAGGGAGGGGCAGACAAGAAGAGGAGTGCTGCTGCAGATTTCTTGAAACGGATAAAGCGAAATACTTCAGTGGACGCAGTGAAAGGTGGTGGTGCCGGTGGTGGTGGAGGAGGAAGTAGTAGCAGCAGCAAGGGAGGTGGTGTTGGTGCCAAAGAGCAGAAGAAAATGGTGAATAATGTAAAGGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATAGCGTTGGAGGGGGATCAGGGTCTGCGGATAAAAGGAATAAGAACATTGAGAACAGCTCTCAGTCGAAGAGGAGTGTTGGTAGACCTCCAAAGAAAGCAGCAGAGACAAATGCAGGAAATTCAAAGCGTGGGAGGGAAAATAGTGCTAGTGCTGGCAAAGATAAGCGACCCAAGAAACGTTCCAAGAAATGA 2184 0.5302 MENHQNHRGEAEPDRENNQNQNNNQVWGTWEELLLAFAVNRHGFKDWDTVAMEVQSRATRLLATARHCEQKFHDLSRRFADQCNDGLTPPQQDAEAAGDNSDHVPWLDELRKLRVAELRREVQRRNDSILSLQLEVKRLEEEKTKENDGKDDQKPDLAVPGEVRPENDKTGGEVEEVGPANSGPERTANADKMLPTTGDESDRENQSVNESNSTGSRFDKTGEGDAKLRIEPDPVQTGSKEVDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSDERKVEQDDDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRRRKDVSGSDGRGGGTSTLPENEEVTMVKSEPLVGILELIKGHEHCSLIESRLESQLESDRYKDIVKQPLDMETIQLRIQKGQYFSCTSAFFRDLLLLFTNATVIFPHDSPESQAARQLHRLVTTEMKNHAQTQSDPIPRKSDSLPPNIPLAKPDSLLSKNKASGPILVCRKRSSMLAKPSSTTFGQKNDQPIFNDKKERAPSDSKPPTKPSSDTDEEEPPKAKEKPVTGVRSLRRSNKNLNNKKLSSNSTPKAGSSGNKPSESLKPEKSKAEGGADKKRSAAADFLKRIKRNTSVDAVKGGGAGGGGGGSSSSSKGGGVGAKEQKKMVNNVKGDKGKERASRHSVGGGSGSADKRNKNIENSSQSKRSVGRPPKKAAETNAGNSKRGRENSASAGKDKRPKKRSKK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01498 727 MobiDBLite consensus disorder prediction 299 313 - -
Vimu4g01498 727 Gene3D - 338 459 IPR036427 GO:0005515
Vimu4g01498 727 MobiDBLite consensus disorder prediction 1 15 - -
Vimu4g01498 727 Coils Coil 115 149 - -
Vimu4g01498 727 CDD Bromodomain 382 447 - -
Vimu4g01498 727 CDD SANT 27 75 IPR001005 -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 220 236 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 648 663 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 496 511 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 83 102 - -
Vimu4g01498 727 SMART bromo_6 125 452 IPR001487 GO:0005515
Vimu4g01498 727 MobiDBLite consensus disorder prediction 512 552 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 584 615 - -
Vimu4g01498 727 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 15 727 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 675 690 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 1 22 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 142 173 - -
Vimu4g01498 727 Pfam Bromodomain 378 437 IPR001487 GO:0005515
Vimu4g01498 727 SUPERFAMILY Bromodomain 353 458 IPR036427 GO:0005515
Vimu4g01498 727 Pfam Myb-like DNA-binding domain 26 74 IPR001005 -
Vimu4g01498 727 ProSiteProfiles Bromodomain profile. 361 433 IPR001487 GO:0005515
Vimu4g01498 727 MobiDBLite consensus disorder prediction 553 583 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 448 727 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 142 345 - -
Vimu4g01498 727 MobiDBLite consensus disorder prediction 273 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01498 Vimu-Chr4 15696983 15701529 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu4g01498 Bromodomain 7.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01498 - - gmx:100779988 1023.46