Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01496 ATGTCAAGTAACCAAGCATCTCAAAAAATGGATGAAGGATTGTCACAAGATTGTTTTTGTTCTCAAGAATATTTTATTCATAAGAATGATCATAAACTTTCTTATTCATCACTTGCAAACTTCAGAAATTATGTTGTATATCATAGTGAACTTCTTAAAAAGAAACTCACAAAGAGTGATGTGAAGGTTGATTTAAATAGACTTCTTTTAAATAAAAAAGAAGCCGAAATATATTTTTTGCCAATGTTGGGAGATTCGGAAGATATTGAAGAAGGAGTAGAAGTTTGTGCCTATGATGATTATGGAAATTTATATTCTTTGACTTTCAAAAAATGGGCAAATAAATACTATGTATTGAGTGGTGAGTGGAAAGTTATCTTCCAAAATCATAAATTGCAATGTAATGATTTCATCACAACATGGATGTTTCGTCATTCAAAACATACCAAGTTATGTCTCGCATTTGAATTTGAGAAGATTGAGATATAG 489 0.2965 MSSNQASQKMDEGLSQDCFCSQEYFIHKNDHKLSYSSLANFRNYVVYHSELLKKKLTKSDVKVDLNRLLLNKKEAEIYFLPMLGDSEDIEEGVEVCAYDDYGNLYSLTFKKWANKYYVLSGEWKVIFQNHKLQCNDFITTWMFRHSKHTKLCLAFEFEKIEI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01496 162 CDD B3_DNA 51 147 IPR003340 GO:0003677
Vimu4g01496 162 Gene3D - 47 156 IPR015300 -
Vimu4g01496 162 SUPERFAMILY DNA-binding pseudobarrel domain 52 154 IPR015300 -
Vimu4g01496 162 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 52 157 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01496 Vimu-Chr4 15691603 15692091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01496 49 162 B3 DNA Binding Superfamily AT4G03170 37.931 1.51e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01496 - - pvu:PHAVU_005G028900g 213.772