Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01492 ATGTGGAGATTTAAGCCATTCGGCCACAAAGAGCAGACTGGTCTTGAAGGCCGCACTGTAGATTTTGGCAATCTTAAAATAAACATTGTTAAGGCCATTGCGGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGTGATGCTGTACATATGTCAAAGCAATATGCCTTGAAGCACATAATATGCAATGATGAGGAATCACTAGGATTGGTAAAGAAGGAGATATCTGTGCTTAAGATGCTGGTAGGACATCCCAATGTTGTCACACTTCATGCACATTCCATCTTTGATATGGGTAGGACAAAGGAGGCATTCCTTGTGATGGAATTTTGTGAAAGGTCTCTGGTCAATGTGCTGGAGAGCCGCGGAGCTGGTTATTTTGATGAGACACAGGTTCTTTTGATCTTCAGGGATATCTGTAATGCAGTTTTTGCTATGCATTGCCTGTCCCCACCTATTGCACACCGAGACTTGAAAGCGGAAAATCTTTTATTAAGTTCAGATGGCATATGGAAGTTATGTGATTTTGGAAGCACTTCCACTAATCACAAACGTTTTGAAAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCCGGAAGTATACAACTCCAGCCTACAGGGCCCCTGAGGTTGTGGTGAAAGTTCCACCGCCTATGCCAAGTTATGTGCCGGGGTTCTATCGTTGGATTGGCCATGTGGTGGACACTAGATGGATGTGGGATCTGTTCCTGAGAGAGGTTATTAATGAGAAGGTAGACATATGGGCTCTTGGATGTCTTCTTTTTCGAATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTTCAAGTCTTAAATGGAAACTACCGTATTCCTGATTTACCGAAATACAATTCATCTATCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCTTCTCCATCAGTTTAGAATTAGGGCAATCAATCGCTGACTTTGGATTTTCTTCCATGGTGGCAGGTCTGAAGTCATTACCTGACAGGCCACCTGAATCACCCTCACCCAACAATCATGAAGGTCATAATGTTACCCTTGATGAATTAGAGGCCAAAATTTCTTTGCAGAAGATTGGATTATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCGCCTTCATCTGGAGAACCGAAGACTACACCACAGCCATCCCTTGCTTCTAGGGGAGGGAGCAGTGGGGGGCAGCTTGGTGCTTTCTGGTCCAGTCAGCACGCAAAGGATCCACTTGTCACTGAGGACAAGAGCAAGCCAATTTTTGATGAAGAACCATCCAGTCACCATATGCCACTGAAACATGATAGACTTCGTCCTGAAAATGAACAATTAGCAAAAAATGTTAGTACTAGCAAAGTGGTTAATGCACAAACTCATACTGTGAAAAGCAGTACACATGGAAAATTAAACAAGCCTGATACCAAACCCTCGAAGGATTTTGAAATAAACTTATTCCAAGATAAAGATCGAATGGAGAATACGGCTAACTTTCAGAACCAGGCTTTTAACTCTTTTGTTGCTGAGTTCGATACCACTAAGCTCAACACTGGACTTAATAACAAATCCGAAAGGGAACAAGCATTAGAGGCTGAAGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACGTGGAAAAAGCTGAAATAACCTCAAAGTTTGAAAAGCTTTCTGCTATCTGCCGATCCCAAAGGCAAGAATTGCAGGATCTCAAGCAAGCACTGGCAGGTCGGACTCCTTCACCAAGCAGAGAGGGTTTGAAAACCTCTACTGCAATTACATCATCTGCACCTATGGATAGAACTGAATGGAAAACTCCCAGTTCAGAACCTAAGTCATGGCAAGCGTTTCCTGAGGAACCCCAACAACAAAAGTCCCTTTCAGCAGGAAATACTACCAAATCAGTCAGGACAAATAATGGCAGGCAGAACAAGCAACCTGTTCAACTGGCTACTAATTTTGATTCATGGGGTTTTGGAACTGATAGCTTCAGTGCTGTACCTACTGGCAGCTCACAGATGCAAAGATCTAGCAGTGCCGGAGGTAAGTCTCAGGGCTTTGATGAGGCAAAGACCTTTGAGAGCAAACCAACTTCTCAACCAGCTGGCTGGGCTGGTTTTTAA 2193 0.4396 MWRFKPFGHKEQTGLEGRTVDFGNLKINIVKAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVLKMLVGHPNVVTLHAHSIFDMGRTKEAFLVMEFCERSLVNVLESRGAGYFDETQVLLIFRDICNAVFAMHCLSPPIAHRDLKAENLLLSSDGIWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEVVVKVPPPMPSYVPGFYRWIGHVVDTRWMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYNSSITDLIRDMLQARPDDRPDITQASALLDWPFFSISLELGQSIADFGFSSMVAGLKSLPDRPPESPSPNNHEGHNVTLDELEAKISLQKIGLSPPMPRRNPPPPPSSGEPKTTPQPSLASRGGSSGGQLGAFWSSQHAKDPLVTEDKSKPIFDEEPSSHHMPLKHDRLRPENEQLAKNVSTSKVVNAQTHTVKSSTHGKLNKPDTKPSKDFEINLFQDKDRMENTANFQNQAFNSFVAEFDTTKLNTGLNNKSEREQALEAEVEKLKEQLKEANVEKAEITSKFEKLSAICRSQRQELQDLKQALAGRTPSPSREGLKTSTAITSSAPMDRTEWKTPSSEPKSWQAFPEEPQQQKSLSAGNTTKSVRTNNGRQNKQPVQLATNFDSWGFGTDSFSAVPTGSSQMQRSSSAGGKSQGFDEAKTFESKPTSQPAGWAGF 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01492 730 Coils Coil 542 597 - -
Vimu4g01492 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vimu4g01492 730 Pfam Protein kinase domain 30 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01492 730 MobiDBLite consensus disorder prediction 472 489 - -
Vimu4g01492 730 MobiDBLite consensus disorder prediction 606 722 - -
Vimu4g01492 730 MobiDBLite consensus disorder prediction 405 425 - -
Vimu4g01492 730 SUPERFAMILY Protein kinase-like (PK-like) 27 327 IPR011009 -
Vimu4g01492 730 MobiDBLite consensus disorder prediction 388 404 - -
Vimu4g01492 730 PANTHER SERINE/THREONINE PROTEIN KINASE 1 212 - -
Vimu4g01492 730 MobiDBLite consensus disorder prediction 383 425 - -
Vimu4g01492 730 Gene3D Transferase(Phosphotransferase) domain 1 10 322 - -
Vimu4g01492 730 SMART serkin_6 27 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01492 730 MobiDBLite consensus disorder prediction 594 730 - -
Vimu4g01492 730 MobiDBLite consensus disorder prediction 472 503 - -
Vimu4g01492 730 ProSiteProfiles Protein kinase domain profile. 27 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01492 Vimu-Chr4 15661465 15666562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01492 26 314 Miscellaneous Gene Families AT2G34180 28.094 2.67e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vimu4g01492 Pkinase 4.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01492 K08853 - gmx:100808507 1063.91