Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01487 ATGTTACAATTGAATTTCTCACTGCAGAAGGCAAAGGAACCGTTAATCACTTGGGTGTTAAATTCTACAATAATCTCATCAATGAGATTATATCAAATGCTTCTTATCATTTTATTTTCTTTGTTTTTACAAGGTTTAATACCTTTTGTCACTCTTTTCCATTGGGACTTCCCACAAGCTCTTGAAGATGAGTATGGGGGATTTCGTAGTCATAAAGTGGTGGAGGATTTTCGTAAATATGCTGACTTTTGCTTCAAGAGCTTCGGAGATAGAGTGAAACATTGGGTGACTCTGAATGAACCCTTATCATATAGTCTGAATGGTTATAATGGTGGAACCTTTGCACCAGGTAGATGTTCTAAGTACGTTGGAAATTGCAGTGCTGGTGACTCAGCCACTGAACCCTACATCGTTGGACACAACCTCTTACTTGCTCATGAATCTGCTGCCACCTTGTACAAGACAAAATACCAGGCTCATCAAAGGGGACAAATTGGGATTACCTTACCGACTCACTACTTTTTGCCGAAATCTAACAGTGCTGCTGATGAAAGAGCTGCAAGTAGAGCTCTAGACTTTTTCTTTGGTTGGTATGCTCATCCGGTTACATATGGTGACTATCCTGAAAGTATGAAATCTTTAGTGGGTGCTAGACTTGCTAAATTCACAAAATCTGAATCTGAAGGCCTAAGAAAATCCATCGATTTTCTTGGTGTGAATTACTACACCACATATTATGCAGAAAATGCTGCACCAGTCACCACCAACAGGACCTTCTACACAGATATGCTAGCCACCCTAACTACTGAAAAGAATGGTGAAGCTATTGGAACCCCGGTGCGTAGAACGGATTTGGATTGGCTCTTCGTATATCCGAAGGGAATTAACTATCTTATGGTATACATAAGGGACAAATACAAGAATCCAAATATTTACATCACTGAAAATGGTGTTGCTAAAGCAAGGGATGATTCAATACCAGTGGATGAAGCCTGCAAGGATGGTATCAGGATTAGTTACCTTATTGGCCATCTTCATTTCCTTCTTCAATCCGTCAAGGAAGGTGTTAATGTGAAGGGATACTATGCATGGTCATTTTCAGATAGCTTTGAATGGGATGCTGGTTACACAGTTCGATTTGGACACATATATGTGGATTACAAGAACAATATGAAAAGATACCTAAAGTTCTCTTGTTTTTGGCTGAAAAAGTTCCTTCTCAACTGA 1227 0.3945 MLQLNFSLQKAKEPLITWVLNSTIISSMRLYQMLLIILFSLFLQGLIPFVTLFHWDFPQALEDEYGGFRSHKVVEDFRKYADFCFKSFGDRVKHWVTLNEPLSYSLNGYNGGTFAPGRCSKYVGNCSAGDSATEPYIVGHNLLLAHESAATLYKTKYQAHQRGQIGITLPTHYFLPKSNSAADERAASRALDFFFGWYAHPVTYGDYPESMKSLVGARLAKFTKSESEGLRKSIDFLGVNYYTTYYAENAAPVTTNRTFYTDMLATLTTEKNGEAIGTPVRRTDLDWLFVYPKGINYLMVYIRDKYKNPNIYITENGVAKARDDSIPVDEACKDGIRISYLIGHLHFLLQSVKEGVNVKGYYAWSFSDSFEWDAGYTVRFGHIYVDYKNNMKRYLKFSCFWLKKFLLN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01487 408 ProSitePatterns Glycosyl hydrolases family 1 active site. 311 319 IPR018120 -
Vimu4g01487 408 PANTHER GLYCOSYL HYDROLASE 41 406 IPR001360 GO:0004553|GO:0005975
Vimu4g01487 408 SUPERFAMILY (Trans)glycosidases 44 406 IPR017853 -
Vimu4g01487 408 PRINTS Glycosyl hydrolase family 1 signature 355 372 IPR001360 GO:0004553|GO:0005975
Vimu4g01487 408 PRINTS Glycosyl hydrolase family 1 signature 233 247 IPR001360 GO:0004553|GO:0005975
Vimu4g01487 408 PRINTS Glycosyl hydrolase family 1 signature 334 345 IPR001360 GO:0004553|GO:0005975
Vimu4g01487 408 PRINTS Glycosyl hydrolase family 1 signature 379 391 IPR001360 GO:0004553|GO:0005975
Vimu4g01487 408 PRINTS Glycosyl hydrolase family 1 signature 311 319 IPR001360 GO:0004553|GO:0005975
Vimu4g01487 408 Gene3D Glycosidases 32 408 - -
Vimu4g01487 408 Pfam Glycosyl hydrolase family 1 42 405 IPR001360 GO:0004553|GO:0005975
Vimu4g01487 408 FunFam Beta-glucosidase 7 25 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01487 Vimu-Chr4 15583511 15585722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01487 52 406 Glycoside Hydrolase AT2G44450 49.438 1.51e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01487 K22279 - gmx:100812639 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01487 4 15583511 15585722 Vimu5g00842 5 10907662 10913631 PCT