Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01482 ATGTTGCAGGGTAAATGCAAGAACCGCAAGGAATCATCATCATGGCCATTGACAAAATGCTTTCACCACACCAATACAAGAGATACTGCCACGAGAATTGCAGAAGAATGGAATAACGTTGATTTTTCTGATCTCTTCATCGGGCAAAGGTTTTCTCATGGTGCTCACAGTAAAATTTACCATGGCATATACAAGCAGCAACATGTTGCTATCAAAATTTTCCAGGTAGGAGAATGTGAGGAAGAGGGAAACCTTAGATCTCTTTTGGAGACACAATTTTTGAGAGAAGTTGCACATCTACCTCGTCTGCACCATCAGAATGTGGTGAGTTTCATAGCAGCATGCAGAGATTCTGATTCTTATTACATTCTCACGGAGTATCAACAAAAGGGTTCTTTGAGGGCACATTTGAACACGTTGGAGTCGAAGCCAATCTCTCTCAGGAATGTCATACTTTTTGCTTTGGATATTGCTCGTGGAATGGAATATGTGCATGCACAAGGCATCATTCACAGAGACCTTAAACCTGAGAATGTGCTTGTAGTTGCTTGTTTGGCTTCAAAGTGCGACTCATTGAGGGGAACATATCGTTGGATGGCACCAGAGATGATCAAAGGAAAATGCTATGGGAGGAAGGTTGATGTGTATAGTTTTGGGCTTATTTTGTGGGAGTTGGTGAGTGGAACACTTCCATTTGAGCATATGAATCCAGTTCAGGTTGCTGTTGCAGTAGTTCATAGGAATTCAAGGCCTCTTATTCCCACACATTGCCCACAAGGTTTGAGAGATTTGATCAATCAATGTTGGGCATTGAAACCACAGAAGAGACTTGAATTCTGTCAGATTGTTCGAGTTTTGGAGCAAATGATCAAAGACATTTTCCTCTAA 888 0.4144 MLQGKCKNRKESSSWPLTKCFHHTNTRDTATRIAEEWNNVDFSDLFIGQRFSHGAHSKIYHGIYKQQHVAIKIFQVGECEEEGNLRSLLETQFLREVAHLPRLHHQNVVSFIAACRDSDSYYILTEYQQKGSLRAHLNTLESKPISLRNVILFALDIARGMEYVHAQGIIHRDLKPENVLVVACLASKCDSLRGTYRWMAPEMIKGKCYGRKVDVYSFGLILWELVSGTLPFEHMNPVQVAVAVVHRNSRPLIPTHCPQGLRDLINQCWALKPQKRLEFCQIVRVLEQMIKDIFL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01482 295 ProSiteProfiles Protein kinase domain profile. 45 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01482 295 SMART serkin_6 45 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01482 295 Pfam Protein tyrosine and serine/threonine kinase 47 286 IPR001245 GO:0004672|GO:0006468
Vimu4g01482 295 Gene3D Phosphorylase Kinase; domain 1 32 129 - -
Vimu4g01482 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vimu4g01482 295 SUPERFAMILY Protein kinase-like (PK-like) 17 286 IPR011009 -
Vimu4g01482 295 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 40 289 - -
Vimu4g01482 295 Gene3D Transferase(Phosphotransferase) domain 1 130 293 - -
Vimu4g01482 295 PIRSF ILK 182 294 - -
Vimu4g01482 295 PIRSF ILK 6 190 - -
Vimu4g01482 295 CDD STKc_MAP3K-like 53 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01482 Vimu-Chr4 15502203 15503126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01482 2 289 MAP Kinase Kinase Kinase AT5G58950 49.175 2.39e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu4g01482 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01482 - - var:108332641 571.237