Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01478 ATGGCTTCTCTTCACTCTTCTTTTTTATTGCCTCCAAATCTCCTTTCCCTTACTTCTCCTTCAAGTTCCGCTACTCACATTCTCCTGAACCTGAGACCCTCCACCACCCACTTGCGACCCCTTTTCACCACACGGCGCCGTTTTGGGAGACCCTTCGCGGTGGCTGAGCAGGCAACGTTGACGGAGGCCGCAAGAAGGCTCTACGTTGGAAACATTCCCCGCACTGTCAACAACGATGAGCTCGCCAAGATTGTTCAAGAACATGGTGTTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCGTTTGTTACAATGAAAACTATTGAGGACGCAAATGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATCAAAGTAAATGTTACCGAAAAACCTTTATCAGCATCAGATTTGCCTTTATCCCAAGCTGAGGAATCTCAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAAGTTTTTTTCTGAGAAGGGAAAAGTTCTGAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACCTTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTGTAAGTTGTTTACTTCAAGCTGAGATATCCAAATCACCTAGAAGATGCATTCCCTTGCCAGACCCCCAATTTTGGGAAACATGCATCAGAAGAAAGAACATGGAGATCATTGGACCACTTGTGCCCATATTGGGTTCCACTTCTGATGTATAG 840 0.4476 MASLHSSFLLPPNLLSLTSPSSSATHILLNLRPSTTHLRPLFTTRRRFGRPFAVAEQATLTEAARRLYVGNIPRTVNNDELAKIVQEHGVVEKAEVMYDKYSGRSRRFAFVTMKTIEDANAVIEKLNGTEIGGREIKVNVTEKPLSASDLPLSQAEESQFIDSPHKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSVSCLLQAEISKSPRRCIPLPDPQFWETCIRRKNMEIIGPLVPILGSTSDV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01478 279 Gene3D - 147 244 IPR012677 -
Vimu4g01478 279 PANTHER OS02G0815200 PROTEIN 62 228 - -
Vimu4g01478 279 SMART rrm1_1 166 239 IPR000504 GO:0003723
Vimu4g01478 279 SMART rrm1_1 66 139 IPR000504 GO:0003723
Vimu4g01478 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Vimu4g01478 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 228 IPR000504 GO:0003723
Vimu4g01478 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Vimu4g01478 279 FunFam 30S ribosomal protein 2, chloroplastic 152 239 - -
Vimu4g01478 279 SUPERFAMILY RNA-binding domain, RBD 153 230 IPR035979 GO:0003676
Vimu4g01478 279 Gene3D - 53 146 IPR012677 -
Vimu4g01478 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
Vimu4g01478 279 CDD RRM1_PSRP2_like 66 145 - -
Vimu4g01478 279 SUPERFAMILY RNA-binding domain, RBD 61 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01478 Vimu-Chr4 15459599 15462038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01478 51 265 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 8.21e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01478 K13126 - gmx:100811197 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01478 4 15459599 15462038 Vimu4g01478 4 15459599 15462038 ECH