Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01477 ATGGCGCCGAAGAAACCTAGAACCGTGTCGAGGAACCCTGAACTCATTAGGGGTATTGGGAAATACTCGAGGTCGCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAACACGGCGGCGTTTTCCCTCGCCACGACCCTTCGCCCAAGCCCGACACCCCGGCCCAGAAGCCTCCCAAGTTTTACCCCGCCGACGATGTCAGGAGGCCCCTGGTCAACAAGCACAAGCCCAAGCCCGCCAAACTCAGGGCTAGCGTTACTCCAGGAACAGTGTTGATCCTGCTTGCTGGCAGATTCAAGGGAAAGAGGGTTGTTTTCCTGAAACAGCTTCCATCTGGATTGCTTCTGGTAACAGGGCCCTTCAAGATCAATGGTGTTCCTCTTAGAAGGGTGAACCAATCTTATGTCATTGGTACATCCACAAAAGTGGACATCTCTGGTGTTAATGTTGATAAATTTGATGACAAGTACTTTTCCAAGGATGCCAAGAAGAAGAAAACAAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTGCTTCCCCAAGAGAAGAAAGATGACCAGAAAACCGTGGATAGTGCTTTGTTAAAGGCAATTGAGAGTGTTCCAGACCTGAAGTCTTATTTGGGTGCTAGGTTTTCTTTGAAGTCAGGAATGAAGCCCCATGAACTAGTCTTCTAG 699 0.495 MAPKKPRTVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKHGGVFPRHDPSPKPDTPAQKPPKFYPADDVRRPLVNKHKPKPAKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFSKDAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDSALLKAIESVPDLKSYLGARFSLKSGMKPHELVF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01477 232 Gene3D - 86 170 IPR014722 -
Vimu4g01477 232 MobiDBLite consensus disorder prediction 41 83 - -
Vimu4g01477 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vimu4g01477 232 FunFam 60S ribosomal protein L6 86 170 - -
Vimu4g01477 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vimu4g01477 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
Vimu4g01477 232 CDD KOW_RPL6 80 232 IPR041997 -
Vimu4g01477 232 Pfam Ribosomal protein L6, N-terminal domain 4 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01477 Vimu-Chr4 15445059 15446652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01477 3 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.172 5.20e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01477 K02934 - gmx:100784101 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01477 4 15445059 15446652 Vimu4g01477 4 15445059 15446652 ECH