Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01475 ATGCTTCGCTCCAATGGGGTTAGGCTCCTCCGATCGCTGCCCGCTAAATGCATCCGTCACGCCGACGCCGAACCTGCATATGAAGGAGTGTGCCAAAGGGGTTTTAGGACTTTGAGTTCGGGACGTTGTAATCCATCCAGAGTTATTGGGAACTTATTTCCAAAAGTTGGAAATGGTTTTACTTTGAAGAACTGGTTGCTGTATGGAGCAGCTAATACATATTGGGGGACATCCAGGTCCATTCATGGGTCGGCATCATTGGCTAGAGACTATTATGAAGTGCTTGGTGTGAGTAAGAATGCAAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTGAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGTCAACAGTATGATCAGATTGGCCATAATGCGTATGTAAACCAACAAAGCTCTGGTTTTGGAGGTGACAGCGGCTTTAATCCATTTGAGCAGATATTCCGAGATCATGATTTTGTCAAGAGCTTTTTTCATCAGAATATTGGTGGAGAAGATGTCAAGACTTTTATTGAACTATCTTTTATGGAAGCCGTCCGAGGATGCACCAAAAATGTTACATTTCAAACAGAAGTGCTCTGTAACACTTGTGGTGGGAGTGGTGTTCCTCCTGGGACAAGACCTGAAACTTGTAAGCGCTGTAAAGGGTCAGGAGTGACATTTGTACAAACTGGCATATTTAGGATGGAGAGTACTTGCGGTACATGTAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAGTCATGCAAAGGAGCAAAGGTTACCAAAGGAACAAAATCAGTCAAATTGGATATTATGGCTGGGATTGACAATAATGAAACTATAAAGGTTTACAGGAGTGGTGGTGCAGATCCTGATGGAGATAACCCTGGTGATCTTTATGTTACTATTAAGGTCAGGGAAGATCCCGTCTTCCGTAGAGAAGGGTCTGATATTCATGTAGATGCTGTCTTAAGTATTACTCAGGCAATTTTGGGTGGAACGATTCAGGTCCCAACTCTTACCGGAGATGTTGTTCTTAAGGTTCGTCCTGGCACCCAACCTGGTCAAAAGGTGGTTTTGAAAAAGAAAGGGATCAAGGCAAAAAATTCTTATACACTTGGGGATCAATACGTTCATTTTAACGTCAGCATTCCAAACAACCTGACAGAGAGACAGCGTGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGGGATTTTGATAAACAGAGAGCTGCATCTGCTTCTGGTTGA 1335 0.4255 MLRSNGVRLLRSLPAKCIRHADAEPAYEGVCQRGFRTLSSGRCNPSRVIGNLFPKVGNGFTLKNWLLYGAANTYWGTSRSIHGSASLARDYYEVLGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSMAYEVLKDEEKRQQYDQIGHNAYVNQQSSGFGGDSGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVRGCTKNVTFQTEVLCNTCGGSGVPPGTRPETCKRCKGSGVTFVQTGIFRMESTCGTCKGTGKIVSNFCKSCKGAKVTKGTKSVKLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKAKNSYTLGDQYVHFNVSIPNNLTERQRELIEEFAKEEQGDFDKQRAASASG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01475 444 FunFam Chaperone protein dnaJ GFA2, mitochondrial 87 198 - -
Vimu4g01475 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 196 339 IPR008971 GO:0006457|GO:0051082
Vimu4g01475 444 CDD DnaJ_C 197 415 - -
Vimu4g01475 444 Gene3D - 199 328 - -
Vimu4g01475 444 Gene3D - 226 286 - -
Vimu4g01475 444 PRINTS DnaJ domain signature 147 166 IPR001623 -
Vimu4g01475 444 PRINTS DnaJ domain signature 127 147 IPR001623 -
Vimu4g01475 444 PRINTS DnaJ domain signature 110 125 IPR001623 -
Vimu4g01475 444 PRINTS DnaJ domain signature 92 110 IPR001623 -
Vimu4g01475 444 NCBIfam molecular chaperone DnaJ 90 429 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vimu4g01475 444 SUPERFAMILY Chaperone J-domain 89 191 IPR036869 -
Vimu4g01475 444 CDD DnaJ_zf 226 286 IPR001305 GO:0031072|GO:0051082
Vimu4g01475 444 ProSiteProfiles dnaJ domain profile. 90 155 IPR001623 -
Vimu4g01475 444 Hamap Chaperone protein DnaJ [dnaJ]. 87 440 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vimu4g01475 444 Gene3D - 333 441 - -
Vimu4g01475 444 FunFam Chaperone protein dnaJ 1, mitochondrial 333 439 - -
Vimu4g01475 444 CDD DnaJ 90 144 IPR001623 -
Vimu4g01475 444 SMART dnaj_3 89 147 IPR001623 -
Vimu4g01475 444 ProSitePatterns Nt-dnaJ domain signature. 132 151 IPR018253 -
Vimu4g01475 444 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 53 437 - -
Vimu4g01475 444 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 213 288 IPR036410 -
Vimu4g01475 444 Pfam DnaJ central domain 226 286 IPR001305 GO:0031072|GO:0051082
Vimu4g01475 444 ProSiteProfiles Zinc finger CR-type profile. 213 291 IPR001305 GO:0031072|GO:0051082
Vimu4g01475 444 Pfam DnaJ C terminal domain 202 412 IPR002939 -
Vimu4g01475 444 Gene3D DnaJ domain 87 198 IPR036869 -
Vimu4g01475 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Vimu4g01475 444 FunFam Molecular chaperone DnaJ 218 291 - -
Vimu4g01475 444 Pfam DnaJ domain 90 152 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01475 Vimu-Chr4 15427905 15434027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01475 83 152 C2H2 Transcription Factor Family AT1G74250 44.000 1.65e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01475 K03686 - gmx:100784630 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01475 4 15427905 15434027 Vimu4g01475 4 15427905 15434027 ECH