Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01468 ATGAAGCGTAGTTGGTCTAATATGGAAAAGAAAATTGTTGAAGAATTCTCTAAAGATGATTTAGAAATACTTGAGCTTCTTGTTGTTATGCAAGGAGAAAAAGATCCTAAAAAATGGCATGAAAATATTTTTGGCAACAAAAGACGCAAGAAATCTCAAAGCTTTCGTGAAGGGTCATCAAAATCATCAACATTTGAAGATGGTAAAGTTGTTGAAAATCATGATTCTTTGGCAATTCCACACCAAAAAGTTTCATCATTAAAAGTACGTTTCTCTTTACAAAAGCCTCTTGCTAGTTCTTCACAAAAACATCTCATTAGTTCTTCACAAAGAAATTCTTCACAAAAACATATCACTAGTTCTTCACAAGGAAATTCTTCACAACAACATCTTCCTAGTGATAATCATGATCCTTCTTATTTGACATTTTTGGAGAATTTTAGAGAGTATATTTTTCAACATAATGAACCTCTTGAGAAACAATTGACACTCAGTGATGTCAATGTTAATCTAAATAGACTTCTTCTCAACAAAAAACATGTTGAAAAATCCTTTTTACCATTCTTAAGAAATGATGAAGATATTGAGAAAGGAATTGAAGTTTGTGTTTATGATATTCGGAAGAATAGTTACACTCTGACATTCAAGAAGTGGACAAATAAATATTATGTGTTGAATGGTGGATGGAAAGATTTCTTTAAAGTTCATAAACTCGAGCAGAATGATACAATCAAATTATGGATGTTTCGTCATTCAAGTCATAGCAAGTTATGTTTTGCTTTAGATTACAAGAAGATTGAAAGTTGA 807 0.3073 MKRSWSNMEKKIVEEFSKDDLEILELLVVMQGEKDPKKWHENIFGNKRRKKSQSFREGSSKSSTFEDGKVVENHDSLAIPHQKVSSLKVRFSLQKPLASSSQKHLISSSQRNSSQKHITSSSQGNSSQQHLPSDNHDPSYLTFLENFREYIFQHNEPLEKQLTLSDVNVNLNRLLLNKKHVEKSFLPFLRNDEDIEKGIEVCVYDIRKNSYTLTFKKWTNKYYVLNGGWKDFFKVHKLEQNDTIKLWMFRHSSHSKLCFALDYKKIES 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01468 268 ProSiteProfiles B3 DNA-binding domain profile. 159 265 IPR003340 GO:0003677
Vimu4g01468 268 Pfam B3 DNA binding domain 160 254 IPR003340 GO:0003677
Vimu4g01468 268 MobiDBLite consensus disorder prediction 40 67 - -
Vimu4g01468 268 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 47 261 IPR005508 GO:0003677
Vimu4g01468 268 CDD B3_DNA 188 259 IPR003340 GO:0003677
Vimu4g01468 268 Gene3D - 152 264 IPR015300 -
Vimu4g01468 268 SMART B3_2 158 265 IPR003340 GO:0003677
Vimu4g01468 268 MobiDBLite consensus disorder prediction 40 56 - -
Vimu4g01468 268 MobiDBLite consensus disorder prediction 100 135 - -
Vimu4g01468 268 SUPERFAMILY DNA-binding pseudobarrel domain 158 262 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01468 Vimu-Chr4 15379970 15380776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01468 151 265 B3 DNA Binding Superfamily AT4G03170 40.323 1.80e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu4g01468 B3 1.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01468 - - vum:124833533 394.815