Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01467 ATGAAGCGTAGTTGGTCTTATATGGAAAAGAAGATTATTATTGAAGAATTCTCCAAAGATGAATTAGAAATACTTGAGCTTCTTATGATTATGCAAGGAGAAAAAGATCCTAAAAAATGGCATGAAAATATTTTTGGCAACAAAAGAAGCAAGAAATTCCAAAGCTTTCATGAAGGGTCATCAAAATCATCAACATTTAAAGATGGTAAAATTGTTGAAAATCATGATTCTTTAGCAATTCCACACCAAAAAGATCAATTATCAATAAAAGTTTCATCAAATGTGTGTTTCTCCTTACAAGAACCTCTTGCTAGTTCTTCAAAAGAACATCTCACTAGTTCTTCACAAGGAAATTCTTCACAGGAACATCGCACTAGTTCTTTACAAGGAAATTCTTCACAAGAACATCTTCCTAGTGATGATCTTGATCCTTCTTATTTGACATTTATGGAGAATTTTAGAGAATATATCTTTCAACATGGTGAACCTCTTGAGAAACAACTAACATCCAGTGATGTCAATGTTAATCTAAATAGACTTCTTCTCAACAAAAAACATGTTGAAAAATCCTTTTTGCCATTCTTAAGAAATGATGAAGATATTGAGAAAGGAATTGAAGTTTTTGTTTATGATATTCGAAAGAATAGTTACACTCTAACATTCAAGAAGTGGACAAATAAATATTATGTGTTGAATGGTGGATGGAAAGATTTCTTTAAAGTTCATAAACTCCAACAGAATGATACAATCAAAGTGTGGATGTTTCATCATTCAAGTCATAACAAGTTATGTTTTGCTTTAGATTACAAGAAAATTGAAAGCTGA 825 0.3055 MKRSWSYMEKKIIIEEFSKDELEILELLMIMQGEKDPKKWHENIFGNKRSKKFQSFHEGSSKSSTFKDGKIVENHDSLAIPHQKDQLSIKVSSNVCFSLQEPLASSSKEHLTSSSQGNSSQEHRTSSLQGNSSQEHLPSDDLDPSYLTFMENFREYIFQHGEPLEKQLTSSDVNVNLNRLLLNKKHVEKSFLPFLRNDEDIEKGIEVFVYDIRKNSYTLTFKKWTNKYYVLNGGWKDFFKVHKLQQNDTIKVWMFHHSSHNKLCFALDYKKIES 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01467 274 MobiDBLite consensus disorder prediction 107 139 - -
Vimu4g01467 274 ProSiteProfiles B3 DNA-binding domain profile. 165 271 IPR003340 GO:0003677
Vimu4g01467 274 SUPERFAMILY DNA-binding pseudobarrel domain 165 267 IPR015300 -
Vimu4g01467 274 SMART B3_2 164 271 IPR003340 GO:0003677
Vimu4g01467 274 CDD B3_DNA 194 260 IPR003340 GO:0003677
Vimu4g01467 274 Gene3D - 162 271 IPR015300 -
Vimu4g01467 274 Pfam B3 DNA binding domain 165 261 IPR003340 GO:0003677
Vimu4g01467 274 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 51 267 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01467 Vimu-Chr4 15377048 15377872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01467 141 271 B3 DNA Binding Superfamily AT4G03170 39.850 5.00e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu4g01467 B3 3.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01467 - - vum:124833533 402.905