Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01465 ATGAGTGTTATGTATAGTCCTGTTTTCAAGTACTCAGATGTAGAGCCTCAGCTAAGGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAACACTGTCACCAACCCAATTCTGGATTACTGAGGTACTGTTCTGCTCCAAGCTCATTGCTGACAAGCCTTGTTCACAACAACATTCTTGAATGTGTCAACGAGGAATCTTTCACGAGTGAGATTCAACAGCATTATGTTCCATCCACAAGTTCAGAAATGGACACCATGTTGTCGAAATTGCTGCCATCCAACGATGGATGGAACAATTCAGAAGCTTTTCAAGAATTTGGAAGCAAGCCTGTGAAGCAAGAAACAGGGGAATCTGTTCCACAAGGACCACCACCACAACAACAGAATGAATATTCTTATGGTGGCTCTCATTTAATTTACCAGTCACAGCAAATTCAAGGCTTGCCGAATGGTTCTTCCAGTGCTTCTCGCAATGCTTTTGGTTGCTCTTTTGATGTGGTGAGCTCCATGGCCTCTGAGAATCCTCTTCAATCTAAAATGGGTGCCAGGAATTGTTCCAATCTCTTCAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCAGCATTGAGAGAAGTAGATGCCTTTAAAGCCAATGATGTTTCAAATAGACAGGCTACTGCATCAACTAGTGGCTTTAGTAGTTCTCTTGCTTTCTCATCCAGGCCATCTTCATGCCTGAAACAGATGCCACAAATTGCTGAAAATGAAAATGAAAATTGTGATCAAAGTAGGATCCTAGTTAATGAAGATGGTAACTCAAAGTTCTACATACCTAGCTTCACCACTGAAATCTGGGAAAGTTCTTCGTTCAATGCTCCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACCCCAAATGCTTTGGAATCTCAGGAATCAGATTTTGGCTATCAAAATCTTGGTCTGACCCACCATTTGAGCCTACCTAGCTCTTCTACAAAGATGTCATCCATAGAGAAGTTTCTTGAAGTTCAAGGTTCAATGCCTTGCAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAGGACCTTCGGCAACAAGTTAAGGTACTCTCAGATTGTAAAGCAAAATGCAAATGTAGTAGTAATGAGAGCCATTGCACTAGAACTTGTGCCTGA 1320 0.4106 MSVMYSPVFKYSDVEPQLRKNQEMDSSIGNPQQHCHQPNSGLLRYCSAPSSLLTSLVHNNILECVNEESFTSEIQQHYVPSTSSEMDTMLSKLLPSNDGWNNSEAFQEFGSKPVKQETGESVPQGPPPQQQNEYSYGGSHLIYQSQQIQGLPNGSSSASRNAFGCSFDVVSSMASENPLQSKMGARNCSNLFRQKSSPAGFFSIENDLAALREVDAFKANDVSNRQATASTSGFSSSLAFSSRPSSCLKQMPQIAENENENCDQSRILVNEDGNSKFYIPSFTTEIWESSSFNAPKTESDDEIMFSTPNALESQESDFGYQNLGLTHHLSLPSSSTKMSSIEKFLEVQGSMPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCSSNESHCTRTCA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01465 439 Gene3D - 363 433 IPR036638 GO:0046983
Vimu4g01465 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 411 IPR011598 GO:0046983
Vimu4g01465 439 MobiDBLite consensus disorder prediction 113 135 - -
Vimu4g01465 439 Pfam Helix-loop-helix DNA-binding domain 367 411 IPR011598 GO:0046983
Vimu4g01465 439 SMART finulus 367 417 IPR011598 GO:0046983
Vimu4g01465 439 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 50 428 - -
Vimu4g01465 439 CDD bHLH_AtbHLH_like 366 419 IPR045239 -
Vimu4g01465 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 427 IPR036638 GO:0046983
Vimu4g01465 439 FunFam Transcription factor bHLH130 family 362 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01465 Vimu-Chr4 15367217 15369438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01465 32 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 36.029 4.38e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g01465 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01465 - - gmx:100812802 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01465 4 15367217 15369438 Vimu5g00088 5 659344 662666 ECH
Vimu4g01465 4 15367217 15369438 Vimu4g01465 4 15367217 15369438 ECH