Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01464 ATGGATAAGGGGGTGCCACCTAGCCTATTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATCTAAAATTAGAGAACTCTAAGCCAATTAAGGTTATTTCGGGGTCTTTGTCACCCAATCCCTCCATTACCAAAACATCTGTGGACTCGAAGGTTAATGATACTAGGAAAACATCCCAGGGTGGTTCTGGTGGCAAACTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTACCACCCCCTGTTAAATTGAGTGCCGATGAAGATGAAGAAGAAACAGAAGCTGGGTATATTTCAAATGATGCACCACTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGGTAATTACTTCTTAAACTTTCTTGTTTTTGCAGATAGTTGGCTCATGATTGCTTATTCCCCAAGTACCTATCAAGAAATGGTGTATTGGCAGGCCTGCTACAAGACTAATTTGCATTCCCTTGTTCATGCTCTCGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAATGGAAGGCAATTTGAGGATGTTACGCGTCAAAAAAATCCAGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCTGAGTACAAGTACTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCACAGACAAGGGAATCACATGTGCCTCGTAATGGGGGAACAAGCACTTCATCTTCCAAACCCACTAGTGGTAATCAAAGATCATCTCAGCAGAATTCATCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATCTTCTATTCAAACATCTCCACTTGGAATGAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAAGTATAAACAACCTAAGTATTCAAAAGATGAGATGCCCCCTCCTGCCTCTCTTCAAGCAGGCAAAAAAGGCCATCACATGGGTGATTTCATACCTCCAGAAGAACTTGAGAAGTTCTTGGCCAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAAGGAGCATGTAGAGAGGTCAAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGCTTTGAAGGGTATTTCAGATCCTATCATGGCAGGTAATATTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGACTTCAGAGGATGACATATATGAGCAGTACAAGAAGCGGATGATGCTTGGTTATCGTTACAGACCCAATCCTCTGAACAATCCTCGAAAAGCTTATTACTGA 1434 0.424 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNLKLENSKPIKVISGSLSPNPSITKTSVDSKVNDTRKTSQGGSGGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYISNDAPLKRQKLGQDGIDQSSRQLDVGNYFLNFLVFADSWLMIAYSPSTYQEMVYWQACYKTNLHSLVHALAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQTRESHVPRNGGTSTSSSKPTSGNQRSSQQNSSYQIPASALYESADNPRASGSSIQTSPLGMSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLQAGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAKEHVERSKIQADNVGHRLLSKMGWKEGALKGISDPIMAGNIKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01464 477 MobiDBLite consensus disorder prediction 253 318 - -
Vimu4g01464 477 Gene3D Surp module 177 247 IPR035967 GO:0003723|GO:0006396
Vimu4g01464 477 SUPERFAMILY Surp module (SWAP domain) 179 242 IPR035967 GO:0003723|GO:0006396
Vimu4g01464 477 Pfam Surp module 191 240 IPR000061 GO:0003723|GO:0006396
Vimu4g01464 477 ProSiteProfiles SURP motif repeat profile. 192 235 IPR000061 GO:0003723|GO:0006396
Vimu4g01464 477 MobiDBLite consensus disorder prediction 23 113 - -
Vimu4g01464 477 Pfam G-patch domain 400 438 IPR000467 GO:0003676
Vimu4g01464 477 SMART G-patch_5 397 439 IPR000467 GO:0003676
Vimu4g01464 477 ProSiteProfiles G-patch domain profile. 399 465 IPR000467 GO:0003676
Vimu4g01464 477 MobiDBLite consensus disorder prediction 246 318 - -
Vimu4g01464 477 MobiDBLite consensus disorder prediction 42 77 - -
Vimu4g01464 477 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 477 IPR040169 -
Vimu4g01464 477 SMART surpneu2 190 244 IPR000061 GO:0003723|GO:0006396
Vimu4g01464 477 MobiDBLite consensus disorder prediction 338 359 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01464 396 477 C2H2 Transcription Factor Family AT5G26610 35.644 3.49e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01464 K13096 - gmx:100786213 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01464 4 15345716 15350059 Vimu4g01464 4 15345716 15350059 ECH