Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01458 ATGGCTCAGAAAACCGAGAACGAAGAAACCGAGTTCAAGGTTCCAGAAACCATTACTCTATGCGTCAACAACTGCGGGGTCACAGGGAACCCTGCCACCAACAACATGTGCCAGAACTGCTTCACCGCCTTCACAGCTTCCACCGCCACAACATCATCCGCTACTGCGGCCACCGCCGGAGTCTCCTCACCCTCCGCTAGATCCGTTGCGTCCGCGCGTCCTCAGAAGAGATCCTTCCCCGAAGAGCCTTCTTTGGCAGCAGATCCTCCCTCCTCCGACCAAAACACGCCGTCCGAGGCCAAACGCGTCGTCAATCGCTGCTCCGGTTGCCGGCGGAAGGTCGGACTCACCGGATTCCGGTGCCGGTGTGGCGAACTCTTCTGCGCGGAGCATCGGTACTCCGATCGCCACGACTGCAGTTACGACTACAAAGCCGCCGGTAGAGAAGCCATCGCCAGGGAGAATCCGGTGGTTAGAGCCGCGAAGATCGTCAAAGTCTGA 501 0.5908 MAQKTENEETEFKVPETITLCVNNCGVTGNPATNNMCQNCFTAFTASTATTSSATAATAGVSSPSARSVASARPQKRSFPEEPSLAADPPSSDQNTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVRAAKIVKV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01458 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 57 - -
Vimu4g01458 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Vimu4g01458 166 MobiDBLite consensus disorder prediction 56 99 - -
Vimu4g01458 166 FunFam Zinc finger AN1-type containing 6 81 162 - -
Vimu4g01458 166 SUPERFAMILY AN1-like Zinc finger 92 160 IPR035896 -
Vimu4g01458 166 Pfam AN1-like Zinc finger 107 144 IPR000058 GO:0008270
Vimu4g01458 166 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Vimu4g01458 166 Pfam A20-like zinc finger 20 41 IPR002653 GO:0003677|GO:0008270
Vimu4g01458 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 165 - -
Vimu4g01458 166 Gene3D - 1 71 - -
Vimu4g01458 166 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Vimu4g01458 166 MobiDBLite consensus disorder prediction 56 72 - -
Vimu4g01458 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Vimu4g01458 166 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 80 - -
Vimu4g01458 166 Gene3D - 82 162 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01458 Vimu-Chr4 15293514 15295557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01458 8 166 C2H2 Transcription Factor Family AT3G52800 42.262 4.40e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01458 - - vum:124827556 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01458 4 15293514 15295557 Vimu4g01458 4 15293514 15295557 ECH