Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01451 ATGGGTCGAGGGAAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGGCAAGTCACCTTCTCCAAGCGCAGAACAGGCTTGTTCAAGAAGGCTCAAGAACTCTCCATTCTCTGTGACTCCGAGGTTGCCGTCATAGTGTTTTCGAACACTGGCAAGCTCTTTGAGTTTTCCAGTTCAGGAATGATGCGAACACTTTCAAGATACAATAAGTGTCTTGGTTCTACGGATGCTGCTGCTGTAGCAGAAATTAAAACACAGGTACTCTTTAATACTTCTAAGGAAGATTCTAAGATGGTGGACATTCTAAGAGAAGAAATTTCAAAGTTAGAATCAAAGCAATTACAGATATTGGGTAAGGATCTGACAGGATTGGGAATAAAAGAATTGCAAAATATAGAGCAGCAACTCAGTGAGGGGTTATTGTCTGTAAAGGCAAGAAAGGAGGAATTACTTATGGAGCAGCTGGAGCAATCTAGAGTTCAGATTGAGGAGCTTCGTTGTCTGTTTCCACAATCAGAAACAATGGTTCCATTTCAGTATCAACGTCCTGAAAGAAAGAACACTTTTGTAAATACCGGTGCCAGATGTCTCAACTTGGCCAATAACTGTGGAAATGAGAAAGGAAGTTCAGACACAGTATTTCATTTGGGGTACTATGTTTTTTCAATTACCACACCTTTAAAATAA 690 0.4058 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDSEVAVIVFSNTGKLFEFSSSGMMRTLSRYNKCLGSTDAAAVAEIKTQVLFNTSKEDSKMVDILREEISKLESKQLQILGKDLTGLGIKELQNIEQQLSEGLLSVKARKEELLMEQLEQSRVQIEELRCLFPQSETMVPFQYQRPERKNTFVNTGARCLNLANNCGNEKGSSDTVFHLGYYVFSITTPLK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01451 229 Coils Coil 146 169 - -
Vimu4g01451 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Vimu4g01451 229 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vimu4g01451 229 ProSiteProfiles K-box domain profile. 93 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu4g01451 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu4g01451 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu4g01451 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu4g01451 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu4g01451 229 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vimu4g01451 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu4g01451 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu4g01451 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu4g01451 229 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vimu4g01451 229 Pfam K-box region 97 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01451 Vimu-Chr4 15204094 15210124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01451 1 218 MADS-box Gene Family AT5G13790 48.718 1.00e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu4g01451 K-box 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01451 - - gmx:547732 366.311