Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01440 ATGGCTTCAAAAGTTTCAGAAAGTGGTGAAAAGAACATGAAGCATAGTTGGTCTAATATGGAAAAGAAGATTATTGAAGAATTCTCTGAAGATGAATTAGAAATACTTGAGCTTCTTGTGATTATGCAAGGAGAAAAGGATCCTAAAAAATGGCATGAAAATATTTTTGACAATAAAAGACGCAAGAAATCCCAAAGCTTTCATGAAGGGTCATCAAAATCATCAACATTTGAAGATGGTAAAGTTGTTGAAAATCATGATTCTTTGGCAATTCCACACCAAAAAGATCAATTATCAATAAAAGTTTCATCAAAGGTATGTTTCTCCTTACAAGAACCTCTCGCTAGTTCTTCACAAGAACATCTCACTAATTCTTCACAAGAAAATTCTTCACAGGAACATTTTACTAATTCTTTACAAGGAAATTCTTCACAAGAACATCTTCCTAGTGATGATCATTATCCTTCTTATTTGACATTTATGGAGAATTTTAGAGGGTATATCTTTCAACATGGTGAACCTCTTGAGAAACAACTAACATCTAGTGATGTCAATATTAATCTAAATAGACTTCTTCTCAACAAAAAACATGTTGAAAAATCCTTTTTGCCATTCTTAATAAATGATGAAGATATTGAGAAAGGAATTGAAGTTTGTGTTTATGATATTGGGAAGAATAGTTACACTCTAACATTCAAGAAGTGGACAAATAAATATTATGTGTTGAATGGTGGATGGAAAGATTTCTTTAAAGTTCATAAACTCGAGCAGAATGATACAATCAAATTATGGATGTTTCGTCATTCAAGTCATAGCAAGTTATGTTTTGCTTTAGATTACAAGAAGATTGAAAGTTGA 858 0.31 MASKVSESGEKNMKHSWSNMEKKIIEEFSEDELEILELLVIMQGEKDPKKWHENIFDNKRRKKSQSFHEGSSKSSTFEDGKVVENHDSLAIPHQKDQLSIKVSSKVCFSLQEPLASSSQEHLTNSSQENSSQEHFTNSLQGNSSQEHLPSDDHYPSYLTFMENFRGYIFQHGEPLEKQLTSSDVNINLNRLLLNKKHVEKSFLPFLINDEDIEKGIEVCVYDIGKNSYTLTFKKWTNKYYVLNGGWKDFFKVHKLEQNDTIKLWMFRHSSHSKLCFALDYKKIES 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01440 285 MobiDBLite consensus disorder prediction 56 80 - -
Vimu4g01440 285 Pfam B3 DNA binding domain 176 271 IPR003340 GO:0003677
Vimu4g01440 285 ProSiteProfiles B3 DNA-binding domain profile. 176 282 IPR003340 GO:0003677
Vimu4g01440 285 SUPERFAMILY DNA-binding pseudobarrel domain 176 279 IPR015300 -
Vimu4g01440 285 SMART B3_2 175 282 IPR003340 GO:0003677
Vimu4g01440 285 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 48 278 IPR005508 GO:0003677
Vimu4g01440 285 MobiDBLite consensus disorder prediction 117 148 - -
Vimu4g01440 285 CDD B3_DNA 177 276 IPR003340 GO:0003677
Vimu4g01440 285 Gene3D - 173 281 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01440 Vimu-Chr4 15098783 15099640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01440 174 282 B3 DNA Binding Superfamily AT4G03170 42.342 9.52e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu4g01440 B3 2.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01440 - - vum:124833533 414.846