Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01423 ATGGCTAAGAAGGGATGGTTAAGCGTGATTAAGAAGCTCTTTTTATGGGGAGCACAGTCCTCGCAAACGAAGAAGGAAAAAAGAAGGGTTTGGATATTTGGGAGGGTTAAGACCAAGAGGTTGCCTTCAATTACAGCACCACCACCCTCAAAAGAAACAAGACTAAGTCAAGCTGAAGAAGAACACAGCAAGCATGCTTTAACAGTGGCCATTGCTTCGGCTGCTGCTGCTGAAGCTGCTATCACTGCTGCTCAGGTTGCTGTTGAGGTTGTCAGGCTCCAATCAGCTCATCAACAACTTAATGAAAAACAAGAACAGCTTCAACCTGTTAAAACCAGACATGATGCTCTTCATTCCACACACCACTGCCAGAGGAAGATGGAAGAAGCTTCAGCCATCAAAATTCAAACAGCATTCAGAGGTTTCCTATCAAGGAAAGCTCTGAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATAATTCGTGGAAGAGCTGTGAGACGCCAAGCTTTGTGCACTCTGAAGTGCTTGGAGTCCATAGTGAGTATCCAGTCACATGTCTTTGCAAGGAGACTCCAAATGGTTGAAAGAAGATGGGATTGTGGTGAACATGAAGATATGGAAGGTTCAAGAGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAAGGTGGGATGACAGCATTTTGTTGAAGGAAGAGGTAGATGGCTCTTGCATGGGCAAGAAAGAAGCAGTTGTTAAGAGAGAAAGAGTAAAAGAATATTCCTTCAACCACAGAAAGTCAGCTGAATCAGAAAGAGATAAAATAAATGGAAGATGGAGGTACTGGATGGAACAGTGGGTAGACACACAACTTTCCAAGAGTAAAGAACTTGAAGATTTAGTCTCAGTTTTCAGCTCACATCACTCTAGACCAGGGGAGGAAAGTGGAAGGAGAGAACTAAAAGTCAGAAATAATCAGAGACAGAATCAGTTTGAAGGATTAGATTCTCCAGCAGTTTCTTCAAGGAACACATTTCCTCACAGAAGCCAGACTTCAGAGGCAGAAGATCACTCATTCCCAAGCTCACCTGCAATTCCTACATATATGGCTGCAACAAAATCAACTCAAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGTTAGGAGGGAATTTTGACATGAACTCTGATAGCTATTCACCATGCAAGAAAAAGTTACCACTTGTGTCTTCTACTAATCAACAAAGATCTCCTAGCTTAAAGGGCCTTCCTAGACCACTGAAGTTAAGTCAGACATTGAGGGATCTCAGCATTAACTCCGATTGCTCTGTGCCAATTTGA 1329 0.4281 MAKKGWLSVIKKLFLWGAQSSQTKKEKRRVWIFGRVKTKRLPSITAPPPSKETRLSQAEEEHSKHALTVAIASAAAAEAAITAAQVAVEVVRLQSAHQQLNEKQEQLQPVKTRHDALHSTHHCQRKMEEASAIKIQTAFRGFLSRKALRALKGIVKLQAIIRGRAVRRQALCTLKCLESIVSIQSHVFARRLQMVERRWDCGEHEDMEGSRDKIIRMDSNSERRWDDSILLKEEVDGSCMGKKEAVVKRERVKEYSFNHRKSAESERDKINGRWRYWMEQWVDTQLSKSKELEDLVSVFSSHHSRPGEESGRRELKVRNNQRQNQFEGLDSPAVSSRNTFPHRSQTSEAEDHSFPSSPAIPTYMAATKSTQAKARSTSSPRARLGGNFDMNSDSYSPCKKKLPLVSSTNQQRSPSLKGLPRPLKLSQTLRDLSINSDCSVPI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01423 442 MobiDBLite consensus disorder prediction 401 416 - -
Vimu4g01423 442 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Vimu4g01423 442 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Vimu4g01423 442 MobiDBLite consensus disorder prediction 305 320 - -
Vimu4g01423 442 MobiDBLite consensus disorder prediction 299 421 - -
Vimu4g01423 442 MobiDBLite consensus disorder prediction 360 394 - -
Vimu4g01423 442 MobiDBLite consensus disorder prediction 321 343 - -
Vimu4g01423 442 Pfam Protein of unknown function (DUF4005) 347 410 IPR025064 -
Vimu4g01423 442 SMART iq_5 127 149 IPR000048 GO:0005515
Vimu4g01423 442 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vimu4g01423 442 Pfam IQ calmodulin-binding motif 130 149 IPR000048 GO:0005515
Vimu4g01423 442 Gene3D - 125 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01423 Vimu-Chr4 14874035 14876401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01423 3 441 IQD Protein Family AT5G13460 42.947 3.57e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01423 - - gmx:100777067 684.1