Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01414 ATGAAGTGTTCACGCAGAGGCAATGGCGACGCCGGCGACGGCGACGCCGTGGGAGGTGGGAACAATAAAGCAAGTGAGCAAGTAGAACCCCACCACTCTCATGGTCACACGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGGAACCCTAGCTCCGTCAAGGATGACCGCGAAGACTTCGACAAAGCCGCGACAGACGGTAAAACGTTCGATGACCTCGGCCTGGCGGATTGGGTGGTTGGTACGTGCCGGGAGCTCGGAATGCGGATGCCACGACACGTGCAGCAGCGTTGCATACCGCCTGTGCTAGAGGGCCGACACGTGCTTGGCATCGACGAGACTGGGAGCGGGAAAACGGCGGCCTTCGCTCTTCCGATCCTGCATCGACTCGCTGAGCACCCCTTTGGCGTTTTCGCACTCGTAGTGACGCCCACGCGCGAACTCGCGTTCCAGCTCGCGGAGCAGTTCCGCGCTCTGGGCTCTGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACACCTGGGAGAATCCATGTCTTGCTCCGTGATAACCCTGATATTTCTCCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTCTTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCAAGAACGTTACCAAGATAAGATGTATGTCTATGAGGCATATGAAGGTTTTAAAACAGTGGAATCACTTAAGCAACAAGTGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCAAAAATGGAGGATATGGGAATTCGGTCTGCCATCGTGTTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCTCTTTATTCCTTCAAATCACAAACTCAGAGGCTTGAAGCTCTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTGCTAGCAACTGATGTTGCCAGTCGGGGATTGGATATTCCTACAGTTGACCTTGTTATCAACTATGATGTTCCGAGGTTTCCACGGGATTATATTCATCGAGTTGGTCGAACGGCAAGAGCAGGTAGAGGTGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCACTTATTGAGAAACAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAACCAGAAACTGAAAATGCTTGCAGAGAAAGGACTGTTGAAGAAAAATAAAAGGAGAAAAAAAAGTAAAGAATTTTCAGAGCAAGGGAAAGAGGTTTTCGTTGCTAAGAATGTCGAGGAAATGAAGATGGGTAATGATAGCATTGAGAGGGAAACAAAAACTAAAAGTGCCAAAAGAAAA 1611 0.4649 MKCSRRGNGDAGDGDAVGGGNNKASEQVEPHHSHGHTLPVPQTQESHQRNPSSVKDDREDFDKAATDGKTFDDLGLADWVVGTCRELGMRMPRHVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISPVFSRTKFLVLDEADRVLDACFQEELKFIFQCLPENRQNLFFSATTTSNLQKLQERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKNQKLKMLAEKGLLKKNKRRKKSKEFSEQGKEVFVAKNVEEMKMGNDSIERETKTKSAKRK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01414 537 Pfam DEAD/DEAH box helicase 94 262 IPR011545 GO:0003676|GO:0005524
Vimu4g01414 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 447 IPR001650 -
Vimu4g01414 537 Gene3D - 279 453 IPR027417 -
Vimu4g01414 537 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 54 536 - -
Vimu4g01414 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 273 IPR014001 -
Vimu4g01414 537 MobiDBLite consensus disorder prediction 50 67 - -
Vimu4g01414 537 SMART ultradead3 88 288 IPR014001 -
Vimu4g01414 537 SMART helicmild6 327 408 IPR001650 -
Vimu4g01414 537 CDD DEADc_DDX49 71 274 - -
Vimu4g01414 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 428 IPR027417 -
Vimu4g01414 537 CDD SF2_C_DEAD 285 417 - -
Vimu4g01414 537 Gene3D - 36 273 IPR027417 -
Vimu4g01414 537 Pfam Helicase conserved C-terminal domain 312 408 IPR001650 -
Vimu4g01414 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Vimu4g01414 537 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01414 Vimu-Chr4 14724008 14731162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01414 69 421 Eukaryotic Initiation Factors Gene Family AT3G13920 32.578 4.92e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01414 K14778 - gmx:100798597 780.015