Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01411 ATGGACTCCTCCTACCACCACTTGGACCACACTGAAGCTCATCTGCCACCAGGCTTCAGGTTCCATCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTCTAGACAGCAACTTCACTGGTAGAGCCATAGCTGAAGTAGACCTTAACAAAAGTGAACCATGGGAGCTCCCAGAGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTACGAACCAATAGGGCTACCGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTACAGCTCCAAGACTTGTTCTTTGGTCGGGATGAAGAAAACCTTGGTTTTCTACCGCGGTAGAGCTCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTACCGGCTGGAAGGCAAATTTGCTTACCATTACCTTTCTCGCAACTCCAAGGACGAGTGGGTCATATCTCGCGTGTTCCAAAAGAGCAACACAACCAACGGAGGCTCAGTTATGTCTGCTTCAAGTGGCTCCAAGAAAACGAGAATGAACACCACCAACACCACTCTCTGCCCAGAACCAAGTTCACCCTCTTCAGTTTACCTACCGCCTCTTCTGGACTCTTCTCCCTACACCACAACAACCCCAGTAAACTTCACTGACCGTAACAACTGTTCCTACGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATTGCTGCAGCCACCGCTGCCGTTGTCTCCCCCAACAACTTCACCAATGCAAGCTTCGACCTTCCACCATCTCAGCCTCTGGGAACGGATCCCTTCGCTAGGTTTCAGAGAAACGTAGGTCTCTCCGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTCCAGTTACCGTTCTTTTTTCCTCCGGCAGCACAGCCCTTGGGCGGTGCCTCCCGTGATCTACTCTGGCCGATGCCGGAGGAGCAAAGGCTGGTCGATGCGGCTCCCAACATTCCACTGGGTGTGTCGGAGCTTGATTGTATGTGGGGATACTAG 1053 0.5119 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSNFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTTNGGSVMSASSGSKKTRMNTTNTTLCPEPSSPSSVYLPPLLDSSPYTTTTPVNFTDRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFTNASFDLPPSQPLGTDPFARFQRNVGLSAFPSLRSLQDNLQLPFFFPPAAQPLGGASRDLLWPMPEEQRLVDAAPNIPLGVSELDCMWGY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01411 350 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Vimu4g01411 350 MobiDBLite consensus disorder prediction 172 203 - -
Vimu4g01411 350 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Vimu4g01411 350 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vimu4g01411 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Vimu4g01411 350 FunFam NAC domain-containing protein 100-like 24 171 - -
Vimu4g01411 350 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01411 Vimu-Chr4 14691854 14694047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01411 1 350 NAC Transcription Factor Family AT5G53950 53.333 6.04e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01411 NAM 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01411 - - vun:114185732 658.677