Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01407 TTGTCACTTGACAGGGAGGATGAAATAGATGATATCCAGAAGGAAATTTCTGTTTTGTCTCAATGTCGATGTCCATACATTACTGAGTATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGTTCAGTTGCTGATCTAGTAGGTTACTTCTGTTTCCTTGCTTCTATATGTTCACTCCAAGCAGGTAATCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACACACTGAAGGGAAAATTCACAGAGACCTTAAAGCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAGGTAGCAGATTTTGGCGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGGAAGACATTTGTAGGAACGCCATTTTGGATGGCGCCTGAGGTTATTCAGAATACTGATGGATATAATGAGAAGGCAGATATTTGGTCTTTGGGAATCACTGCTATTGAGATGGCAAAGGGGGAGCCTCCACTAGCCGATCTTCACCCCATGAGAGTGCTTTTCATCATACCTCGGGAGAATCCTCCGCAGCTAGATGATCATTTTTCCCGTCCAATGAAAGAATTTGTCTCATTGTGCTTAAAGAAGGTTCCTGCTGAGGCAAGTAGGCCAAGTGCTAAGGAACTTTTGAAGGACCGTTTTATTCGGAATGCTAGGAGGAGTTCAAAGCTTGTAGAAAGAATAAGAGAACGTCCAAAATATCAAATAAAGGAAGAAGATCTGGAAACACCTAGAAATGTCTCAAGAGGGATAGGGGAAGGATCAGATACTGTAAAAGTGGCTAGAGATGTAAGAGGTGAAGAAAATAATCGACCCAGTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGATTTCAATATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAATTTAGAGAGAAGAAAGCTGAAGCATCACATAATCAGGGAACCCAAAGAAAAGCTCCTGAGAGTGGTTATCAAGGGGGATCTGCTAATAGAAGGGCACTTAGTGAATCACTTGAAAGTTCCTCTGGAAGAGATCGAGTTCCCCACCATGATGAGCATCTGGACAATCACACTGAAGATGATGAATTATCCGGAAATGGATCAGGAACTATTGTTATTCGATCTCCAAAAGGGTCAAGGTCATCTATATTCGGTGACCAGAGCTCTCAATATAGTAGCAGATATTCTTCTTTTGATGATGCCTCTACAAGTGGGACTGTTGTTTTACGTGGTCAGCATGATGAGCCTGATTCTCCACAGCCACTAAGGTCTCGACTTGGACTTAATGACAGAAATTCAAATTCCTCAATGGAAGACAGTGCGGCAAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGAGGGCTCAGGAAAGTGGGTTCTCGAGAAAGATTGGCCCGAGGAAAAATCAACAATGACAGACAGGAAGACAAGAAAGATGGAAAGGCAAGCAGCTTCGACTCTTCAAGGGGCTTGTCAAGATCACATCATGCTAATAATGATGAAGGAAGTGCTAAAATAATGTTATCCTCAGTGCCATTATCTGCTTTACTTGTTCCTTCTTTAAAAGAGGCCATTGCTGATGATCCCGAAGGGGCAGTTGTGCGGGCAGTTATCAATTCTTTAATAAACATGGAGGGCTCAAAACCTAACTCCTGTGAAGCTCTTCTCAAACAGTTGCTTCAGCGATTGGCAAGTTCAAAGGAAGATTCATTGAAGGACCTGCAGCGGCTAGCAGGGGAACTATTCAGCAAGACCAAGTCCACCGAAGAAACCCGAAATGCACTGGCTGATAACAGGAAAAAACAACAAAACAAGGAACATAATCCTAATAGCAATTTAAGTCCACTAGCAAGATTTCTTCTATCAAGGATGTATAACATAGTGAGTGGTAACTACAACTGTGCCGAAATAAAAGCGATAGTGCTGCTGCTTGCTCCTCGTTTTTGTTTCTTCATAGCAGCAAGATATGGAGGCTATAATGCTAGAAAGAGTTCAACTTTTGGGATGGTTGACTTCGGGAAGGTTGATGTCTATGTTGAAGAAACTAAGAGAAAGCTGGAACTTGTTCTGCAACGACCTGATCTTTCGTAG 2163 0.4212 MSLDREDEIDDIQKEISVLSQCRCPYITEYYGSYLNQTKLWIIMEYMAGGSVADLVGYFCFLASICSLQAGNPLDEMSIACILRDLLHAVDYLHTEGKIHRDLKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPMKEFVSLCLKKVPAEASRPSAKELLKDRFIRNARRSSKLVERIRERPKYQIKEEDLETPRNVSRGIGEGSDTVKVARDVRGEENNRPSDQGKTLKSAGWDFNIGGSQGTGTFRNVSRPPQFREKKAEASHNQGTQRKAPESGYQGGSANRRALSESLESSSGRDRVPHHDEHLDNHTEDDELSGNGSGTIVIRSPKGSRSSIFGDQSSQYSSRYSSFDDASTSGTVVLRGQHDEPDSPQPLRSRLGLNDRNSNSSMEDSAANLAEAKAAIQGGLRKVGSRERLARGKINNDRQEDKKDGKASSFDSSRGLSRSHHANNDEGSAKIMLSSVPLSALLVPSLKEAIADDPEGAVVRAVINSLINMEGSKPNSCEALLKQLLQRLASSKEDSLKDLQRLAGELFSKTKSTEETRNALADNRKKQQNKEHNPNSNLSPLARFLLSRMYNIVSGNYNCAEIKAIVLLLAPRFCFFIAARYGGYNARKSSTFGMVDFGKVDVYVEETKRKLELVLQRPDLS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01407 720 Gene3D Transferase(Phosphotransferase) domain 1 1 269 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 483 508 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 387 433 - -
Vimu4g01407 720 SUPERFAMILY Protein kinase-like (PK-like) 5 256 IPR011009 -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 257 465 - -
Vimu4g01407 720 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 3 608 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 483 524 - -
Vimu4g01407 720 Pfam Protein kinase domain 7 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01407 720 SMART serkin_6 3 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01407 720 Coils Coil 581 601 - -
Vimu4g01407 720 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01407 720 MobiDBLite consensus disorder prediction 276 294 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 612 630 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 612 635 - -
Vimu4g01407 720 FunFam serine/threonine-protein kinase dst1 isoform X1 1 269 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 337 361 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 449 465 - -
Vimu4g01407 720 CDD STKc_MST3_like 6 255 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 362 386 - -
Vimu4g01407 720 MobiDBLite consensus disorder prediction 305 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01407 Vimu-Chr4 14648415 14656082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01407 13 647 MAP Kinase Kinase Kinase Kinase AT3G15220 61.017 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vimu4g01407 Pkinase 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01407 K08838 - gmx:100815042 1040.41