Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01403 ATGACCACCAGAGAAATCCTTAACAAGATGAAGGTAACCTATCTCACTGTTGAGATAATGTTGTCCTGTTGTAATGGAGAGGGTTGGGAGGGCACCACTGGTTTCTCTGGTCAGAACATATTTCTTTACATGTTCAGAATTGAATGGGTAAAAGTTGGTTTGGGTTCATCAGACCCTGATTCAGGGAAAGGCAAGAGCAAGATGTCGAAGAACATAACTCATGGCTTTCACTTGGTAAAAGGAAAATCATATCATGACATGGAGGATTATGTTGTTGCTCAATTTAAGCAAGTAGATAGCAATGAATTGGGTTTGTTTGCAATATTCGATGGACACGCAGGTCACAATGTACCTAATTACCTACAGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGAAAGAACCTGCAGATGCTGTCAAGAGAGCTTACAGTAAAACTGATTCTAATATTTTAGAGATGTCGGGTGAATTAGGTAGAGGAGGTTCAACTGCAGTTACAGCCATATTAGTCAATTGTCAGAAGTTAATAGTAGCCAACATTGGGGATTCCAGGGCTGTCTTATGCAAGAAGGGTGTGGCCAAACAATTATCAGTGGATCATGAGCCAAACACGGAGCATGAAGATATAAAAAATAGAGGTGGTTTTCACAGAGCTAATGATTCTCGCAGTTTTTCTGATCTAAGCAGCATAGACTTTTGTTCCAGTGCTAAGGATGCAACTTTTATCATTACTTCAGGGGATGTTCCACGGGTTGATGGACGGCTGGCTGTGTCGAGGGCTTTTGGTGACAAAAGCCTGAAGAAACATTTGAGTTCAGAGCCATTTGTGACAGTGGAGAATATAAATGATGATGCAGAATTCATTATATTAGCCAGTGATGGATTATGGAAGGTCATGTCAAATCAAGAAGCAGTTAATTGTATAAAAAATATAAAGGATGCTCGGTCTTCAGCAAAGCGCCTTACCGAAGAAGCAGTTAACAAGAAAAGCACTGATGATATCTCGTGTATTGTTGTCAAATTTCAGTGA 1041 0.3977 MTTREILNKMKVTYLTVEIMLSCCNGEGWEGTTGFSGQNIFLYMFRIEWVKVGLGSSDPDSGKGKSKMSKNITHGFHLVKGKSYHDMEDYVVAQFKQVDSNELGLFAIFDGHAGHNVPNYLQSHLFDNILKEPDFWKEPADAVKRAYSKTDSNILEMSGELGRGGSTAVTAILVNCQKLIVANIGDSRAVLCKKGVAKQLSVDHEPNTEHEDIKNRGGFHRANDSRSFSDLSSIDFCSSAKDATFIITSGDVPRVDGRLAVSRAFGDKSLKKHLSSEPFVTVENINDDAEFIILASDGLWKVMSNQEAVNCIKNIKDARSSAKRLTEEAVNKKSTDDISCIVVKFQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01403 346 SMART PP2C_4 63 343 IPR001932 -
Vimu4g01403 346 Gene3D - 68 346 IPR036457 -
Vimu4g01403 346 Pfam Protein phosphatase 2C 86 338 IPR001932 -
Vimu4g01403 346 CDD PP2Cc 74 345 IPR001932 -
Vimu4g01403 346 ProSiteProfiles PPM-type phosphatase domain profile. 73 345 IPR001932 -
Vimu4g01403 346 SUPERFAMILY PP2C-like 69 345 IPR036457 -
Vimu4g01403 346 PANTHER PROTEIN PHOSPHATASE 68 345 IPR015655 GO:0004722|GO:0006470
Vimu4g01403 346 ProSitePatterns PPM-type phosphatase domain signature. 105 113 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01403 Vimu-Chr4 14557834 14565276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01403 35 346 PP2C-type Phosphatase Gene Family AT3G15260 64.968 1.75e-144 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01403 K17506 - gmx:100815245 486.493