Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g01399 | ATGGCCACTGTTGGTTGCTTCGTCCGCAAGCTGTTGCCATATGGTCCATGTTCTACTTACTTTGGTGTATCTTCATTTGGGCATCTTATCTATTTCTTCGAGGGAGGTGTTTCTGAATCCGCTTTCAGTTTGAGTAGGGGTTCTCCCACTTTTGAGGTTGAAAGTCTTGGAGCTGTGACTAAAAGATACTTCATTGTAGTTCTTCTTCTTAAGTTCAACGCTGCACTTTTCAGTGATACTAGCTTCTGCTGTGCTCATGGGAGCTTAGTCCTGATTTTGAGCAGAGTATATATCAGTTTGGTTTCAGCAATGGTGCTGCTCAGATGTTTCTCAATGACACTTTTGCAATGGTGTTTTTTGGCTTGCTTAGTTTGCTTGTCACTAGGGCTTAATAATAATCAAGCCCCCTGTGACCCTCATGATTTATCAGCTCTGAAGAAGTTTGCCGGAGAACTTACAAGTGGCTCTATCATCGCAGCGTGGTCCAATGACTCTGTCTGCTGCAACTGGCGTGGAGTTGTTTGTGATAATGTGACTGGAGGTGGTGGAACAGTTACGAGTAGAGTGACCAAGTTGATCCTGCCTGAAATGGGTCTTAATGGTACAATTTCACCCTCTTTAGCACATCTAGATCAGCTCAGTGTGCTGAATCTTTCATTAAATCACCTTAAAGGTGGATTGCCTGTGGAGTTCTCCCAGTTGAAGCTGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCTGGACCTGTTGCTGGAGCTCTTTCTGGTCTGCAATCTATTGAAGTATTGAATATTTCTAGCAATTCACTTTCTGGAGTTCTCTTCCCTTTTGGGGAGTTCCCTCGTCTCCATGCTCTGAACGTGAGCAACAATTCATTCACTGGCGGATTCAATTCACAAATTTGCAGTGCTACCAAAGAACTTCACACCCTTGATTTGTCAGCAAATAATTTTATTGGTGGTCTTGAAGGCTTGGACAACTGCACCGCATCTCTCCAACGGCTGCATTTGGATTCCAATTCATTTACTGGCCCTCTTCCAGATTCCTTGTATTCAATGTTAGCCTTGGAGGAGCTCTCAGTCTCTTCCAACAATATTTCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAAAATTCTGGTGCTTTGTGGAAACAGGTTTTCTGGGGAACTTCCAAATGTATTTGGGAATCTTTTGCAGCTAGAAGAATTAGAAGCTCATGGCAATTCATTTTCTGGATCCTTGCCCTCCACCTTGGCTTCATGCTCTAAGCTTAGGGTGCTTAACCTCCGAAATAATTCCTTTTCAGGGCCTATTGGTCTTAATTTCACTGGCTTGTCTAATCTTCAAACACTCGACCTTGCTACTAATAATTTCACTGGACACCTTCCAACTTCCCTGTCCTTTTGTCGTGAATTGAAGGTTTTAAGCCTTGCTAGGAATGGCTTAACTGGCTCTATCCCTGAAAACTATGCAAACCTAAGTTCACTTTTGTTTGTATCCTTTTCAAACAACAGCATTGAGAACTTATCTCGGGCAGTATCTGTTTTGCAGCAGTGCAAAAATCTCACCACTCTTATCCTCACCAAGAATTTCCATGGTGAGGAAATTCGGGAAAGTACCATAGTAGGATTTGAGAGCCTTATGATTTTAGCACTTGGAAATTGTGGTCTTAAAGGTCACATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGACTTGTCTTGGAACCGTTTGAATGGCAGTGTTCCTTCTTGGATTGGTCAGATGGACAGTTTGTTCTATATGGATTTCTCGAATAATTCTCTCACAGGAGAAATACCGAAAAGTTTGACAGAGCTGAAGGGCCTCATGTGTGCAAACTGTAATAGAGAAAATCTTGCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGCAAGTGGACTGCAATATAACCAGGCCTCAAGTTTCCCCCCTTCAATTTACTTGAGCAATAACATATTGAGTGGAAATATATGGCCCGAAATTGGTCAATTGAAAGCACTGCATGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGGAGAACTTGGAAACCTTAGATTTGTCTTATAATGATCTTACTGGAGAAATTCCTTCATCATTTAACAACCTCACTTTCTTGTCAAAGTTCAGTGTGGCATATAATCGGTTAGAGGGATCAATTCCAACTGGGAATCAATTTTTAAGCTTCCCAAGTTCAAGCTTTGAGGGAAACCAAGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATTGTCAACAATACTAAGCCCATCAGTTCTTCCGGTTCTTCCAAAAAGCTTGGTAGAAGCAATGTCCTTGGCATAACTGTAAGTATAGGGATAGGGCTTGCACTGCTTCTTGCATTTATTTTGCTAAGAATGTCAAGGGGGGATGATGATAAGCCCATCGACAACTATGATGAGGAACTCAATAGCAGGCCACACAGGTTATCCGAGGCACTTGTTTCCTCAAAGTTGGTTCTTTTCCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACAAAAGCAGCTATCAAGAGACTTTCAGGTGACTGTGGTCAGATGGAACGTGAATTTCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGATATTGTCGGCATGGCAATGACAGACTGTTAATATACTCGTACTTGGAGAATGGAAGCTTGGATTATTGGCTGCATGAGTGTGTGGATGAAAGCGCAGCTCTAAAATGGGATGCAAGACTGAAGATTGCACAAGGTGCTGCACGTGGATTAGCTTACTTGCATAAGGGTTGTGAACCATTCATAGTGCATCGTGATGTTAAATCCAGCAACATTCTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCACGACTACTTCAACCATATGACACTCATGTGACAACTGACTTGGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACATTCAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTAACAGGTAGAAGACCCGTGGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTTTCTTGGGTGTTCCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCATAAGGATCAAGAGAAACAGCTACTAGAGGTGTTTGCCATTGCTTGTAAATGTCTAGACCAAGATCCTAGGCAGAGACCCGCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTCTCATCAGTGA | 3474 | 0.418 | MATVGCFVRKLLPYGPCSTYFGVSSFGHLIYFFEGGVSESAFSLSRGSPTFEVESLGAVTKRYFIVVLLLKFNAALFSDTSFCCAHGSLVLILSRVYISLVSAMVLLRCFSMTLLQWCFLACLVCLSLGLNNNQAPCDPHDLSALKKFAGELTSGSIIAAWSNDSVCCNWRGVVCDNVTGGGGTVTSRVTKLILPEMGLNGTISPSLAHLDQLSVLNLSLNHLKGGLPVEFSQLKLLKFLDVSHNMLSGPVAGALSGLQSIEVLNISSNSLSGVLFPFGEFPRLHALNVSNNSFTGGFNSQICSATKELHTLDLSANNFIGGLEGLDNCTASLQRLHLDSNSFTGPLPDSLYSMLALEELSVSSNNISGQLSKQLSKLSNLKILVLCGNRFSGELPNVFGNLLQLEELEAHGNSFSGSLPSTLASCSKLRVLNLRNNSFSGPIGLNFTGLSNLQTLDLATNNFTGHLPTSLSFCRELKVLSLARNGLTGSIPENYANLSSLLFVSFSNNSIENLSRAVSVLQQCKNLTTLILTKNFHGEEIRESTIVGFESLMILALGNCGLKGHIPSWLSNCRKLAVLDLSWNRLNGSVPSWIGQMDSLFYMDFSNNSLTGEIPKSLTELKGLMCANCNRENLAAFAFIPLFVKRNTSASGLQYNQASSFPPSIYLSNNILSGNIWPEIGQLKALHVLDLSRNNITGTIPSTISEMENLETLDLSYNDLTGEIPSSFNNLTFLSKFSVAYNRLEGSIPTGNQFLSFPSSSFEGNQGLCREIDSPCKIVNNTKPISSSGSSKKLGRSNVLGITVSIGIGLALLLAFILLRMSRGDDDKPIDNYDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDESAALKWDARLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWHKDQEKQLLEVFAIACKCLDQDPRQRPAIEVVVSWLDSVRFDGSHQ | 1157 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g01399 | 1157 | SUPERFAMILY | L domain-like | 136 | 417 | - | - | |
Vimu4g01399 | 1157 | Pfam | Protein kinase domain | 877 | 1144 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g01399 | 1157 | Gene3D | Ribonuclease Inhibitor | 136 | 369 | IPR032675 | - | |
Vimu4g01399 | 1157 | Gene3D | Ribonuclease Inhibitor | 370 | 470 | IPR032675 | - | |
Vimu4g01399 | 1157 | SUPERFAMILY | L domain-like | 653 | 780 | - | - | |
Vimu4g01399 | 1157 | FunFam | Phytosulfokine receptor 1 | 839 | 951 | - | - | |
Vimu4g01399 | 1157 | ProSiteProfiles | Leucine-rich repeat profile. | 709 | 731 | IPR001611 | GO:0005515 | |
Vimu4g01399 | 1157 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 998 | 1010 | IPR008271 | GO:0004672|GO:0006468 | |
Vimu4g01399 | 1157 | Pfam | Leucine rich repeat N-terminal domain | 139 | 176 | IPR013210 | - | |
Vimu4g01399 | 1157 | ProSiteProfiles | Leucine-rich repeat profile. | 308 | 330 | IPR001611 | GO:0005515 | |
Vimu4g01399 | 1157 | ProSiteProfiles | Protein kinase domain profile. | 876 | 1157 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g01399 | 1157 | SMART | LRR_typ_2 | 683 | 706 | IPR003591 | - | |
Vimu4g01399 | 1157 | SMART | LRR_typ_2 | 498 | 521 | IPR003591 | - | |
Vimu4g01399 | 1157 | SMART | LRR_typ_2 | 210 | 233 | IPR003591 | - | |
Vimu4g01399 | 1157 | SMART | LRR_typ_2 | 707 | 730 | IPR003591 | - | |
Vimu4g01399 | 1157 | SMART | LRR_typ_2 | 378 | 401 | IPR003591 | - | |
Vimu4g01399 | 1157 | SMART | LRR_typ_2 | 234 | 257 | IPR003591 | - | |
Vimu4g01399 | 1157 | SMART | LRR_typ_2 | 450 | 474 | IPR003591 | - | |
Vimu4g01399 | 1157 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 348 | 443 | - | - | |
Vimu4g01399 | 1157 | SUPERFAMILY | Protein kinase-like (PK-like) | 858 | 1147 | IPR011009 | - | |
Vimu4g01399 | 1157 | PRINTS | Leucine-rich repeat signature | 707 | 720 | - | - | |
Vimu4g01399 | 1157 | PRINTS | Leucine-rich repeat signature | 686 | 699 | - | - | |
Vimu4g01399 | 1157 | Gene3D | Ribonuclease Inhibitor | 473 | 780 | IPR032675 | - | |
Vimu4g01399 | 1157 | Pfam | Leucine rich repeat | 428 | 487 | IPR001611 | GO:0005515 | |
Vimu4g01399 | 1157 | Pfam | Leucine rich repeat | 685 | 744 | IPR001611 | GO:0005515 | |
Vimu4g01399 | 1157 | FunFam | Leucine-rich repeat receptor-like kinase | 140 | 260 | - | - | |
Vimu4g01399 | 1157 | SUPERFAMILY | RNI-like | 328 | 630 | - | - | |
Vimu4g01399 | 1157 | CDD | STKc_IRAK | 882 | 1148 | - | - | |
Vimu4g01399 | 1157 | FunFam | Leucine-rich repeat receptor-like protein kinase | 952 | 1157 | - | - | |
Vimu4g01399 | 1157 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 356 | 1148 | - | - | |
Vimu4g01399 | 1157 | ProSitePatterns | Protein kinases ATP-binding region signature. | 882 | 904 | IPR017441 | GO:0005524 | |
Vimu4g01399 | 1157 | FunFam | Tyrosine-sulfated glycopeptide receptor 1 | 447 | 781 | - | - | |
Vimu4g01399 | 1157 | Gene3D | Phosphorylase Kinase; domain 1 | 839 | 951 | - | - | |
Vimu4g01399 | 1157 | Gene3D | Transferase(Phosphotransferase) domain 1 | 952 | 1153 | - | - | |
Vimu4g01399 | 1157 | SMART | serkin_6 | 876 | 1147 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g01399 | Vimu-Chr4 | 14479382 | 14482985 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g01399 | 142 | 1153 | Receptor kinase-like Gene Family | AT1G55610 | 34.489 | 1.37e-164 | 517 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-Xb-1 | Vimu4g01399 | Pkinase | 8.4e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g01399 | - | - | gmx:100797812 | 1837.39 |