Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01399 ATGGCCACTGTTGGTTGCTTCGTCCGCAAGCTGTTGCCATATGGTCCATGTTCTACTTACTTTGGTGTATCTTCATTTGGGCATCTTATCTATTTCTTCGAGGGAGGTGTTTCTGAATCCGCTTTCAGTTTGAGTAGGGGTTCTCCCACTTTTGAGGTTGAAAGTCTTGGAGCTGTGACTAAAAGATACTTCATTGTAGTTCTTCTTCTTAAGTTCAACGCTGCACTTTTCAGTGATACTAGCTTCTGCTGTGCTCATGGGAGCTTAGTCCTGATTTTGAGCAGAGTATATATCAGTTTGGTTTCAGCAATGGTGCTGCTCAGATGTTTCTCAATGACACTTTTGCAATGGTGTTTTTTGGCTTGCTTAGTTTGCTTGTCACTAGGGCTTAATAATAATCAAGCCCCCTGTGACCCTCATGATTTATCAGCTCTGAAGAAGTTTGCCGGAGAACTTACAAGTGGCTCTATCATCGCAGCGTGGTCCAATGACTCTGTCTGCTGCAACTGGCGTGGAGTTGTTTGTGATAATGTGACTGGAGGTGGTGGAACAGTTACGAGTAGAGTGACCAAGTTGATCCTGCCTGAAATGGGTCTTAATGGTACAATTTCACCCTCTTTAGCACATCTAGATCAGCTCAGTGTGCTGAATCTTTCATTAAATCACCTTAAAGGTGGATTGCCTGTGGAGTTCTCCCAGTTGAAGCTGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCTGGACCTGTTGCTGGAGCTCTTTCTGGTCTGCAATCTATTGAAGTATTGAATATTTCTAGCAATTCACTTTCTGGAGTTCTCTTCCCTTTTGGGGAGTTCCCTCGTCTCCATGCTCTGAACGTGAGCAACAATTCATTCACTGGCGGATTCAATTCACAAATTTGCAGTGCTACCAAAGAACTTCACACCCTTGATTTGTCAGCAAATAATTTTATTGGTGGTCTTGAAGGCTTGGACAACTGCACCGCATCTCTCCAACGGCTGCATTTGGATTCCAATTCATTTACTGGCCCTCTTCCAGATTCCTTGTATTCAATGTTAGCCTTGGAGGAGCTCTCAGTCTCTTCCAACAATATTTCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAAAATTCTGGTGCTTTGTGGAAACAGGTTTTCTGGGGAACTTCCAAATGTATTTGGGAATCTTTTGCAGCTAGAAGAATTAGAAGCTCATGGCAATTCATTTTCTGGATCCTTGCCCTCCACCTTGGCTTCATGCTCTAAGCTTAGGGTGCTTAACCTCCGAAATAATTCCTTTTCAGGGCCTATTGGTCTTAATTTCACTGGCTTGTCTAATCTTCAAACACTCGACCTTGCTACTAATAATTTCACTGGACACCTTCCAACTTCCCTGTCCTTTTGTCGTGAATTGAAGGTTTTAAGCCTTGCTAGGAATGGCTTAACTGGCTCTATCCCTGAAAACTATGCAAACCTAAGTTCACTTTTGTTTGTATCCTTTTCAAACAACAGCATTGAGAACTTATCTCGGGCAGTATCTGTTTTGCAGCAGTGCAAAAATCTCACCACTCTTATCCTCACCAAGAATTTCCATGGTGAGGAAATTCGGGAAAGTACCATAGTAGGATTTGAGAGCCTTATGATTTTAGCACTTGGAAATTGTGGTCTTAAAGGTCACATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGACTTGTCTTGGAACCGTTTGAATGGCAGTGTTCCTTCTTGGATTGGTCAGATGGACAGTTTGTTCTATATGGATTTCTCGAATAATTCTCTCACAGGAGAAATACCGAAAAGTTTGACAGAGCTGAAGGGCCTCATGTGTGCAAACTGTAATAGAGAAAATCTTGCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGCAAGTGGACTGCAATATAACCAGGCCTCAAGTTTCCCCCCTTCAATTTACTTGAGCAATAACATATTGAGTGGAAATATATGGCCCGAAATTGGTCAATTGAAAGCACTGCATGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGGAGAACTTGGAAACCTTAGATTTGTCTTATAATGATCTTACTGGAGAAATTCCTTCATCATTTAACAACCTCACTTTCTTGTCAAAGTTCAGTGTGGCATATAATCGGTTAGAGGGATCAATTCCAACTGGGAATCAATTTTTAAGCTTCCCAAGTTCAAGCTTTGAGGGAAACCAAGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATTGTCAACAATACTAAGCCCATCAGTTCTTCCGGTTCTTCCAAAAAGCTTGGTAGAAGCAATGTCCTTGGCATAACTGTAAGTATAGGGATAGGGCTTGCACTGCTTCTTGCATTTATTTTGCTAAGAATGTCAAGGGGGGATGATGATAAGCCCATCGACAACTATGATGAGGAACTCAATAGCAGGCCACACAGGTTATCCGAGGCACTTGTTTCCTCAAAGTTGGTTCTTTTCCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACAAAAGCAGCTATCAAGAGACTTTCAGGTGACTGTGGTCAGATGGAACGTGAATTTCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGATATTGTCGGCATGGCAATGACAGACTGTTAATATACTCGTACTTGGAGAATGGAAGCTTGGATTATTGGCTGCATGAGTGTGTGGATGAAAGCGCAGCTCTAAAATGGGATGCAAGACTGAAGATTGCACAAGGTGCTGCACGTGGATTAGCTTACTTGCATAAGGGTTGTGAACCATTCATAGTGCATCGTGATGTTAAATCCAGCAACATTCTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCACGACTACTTCAACCATATGACACTCATGTGACAACTGACTTGGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACATTCAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTAACAGGTAGAAGACCCGTGGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTTTCTTGGGTGTTCCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCATAAGGATCAAGAGAAACAGCTACTAGAGGTGTTTGCCATTGCTTGTAAATGTCTAGACCAAGATCCTAGGCAGAGACCCGCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTCTCATCAGTGA 3474 0.418 MATVGCFVRKLLPYGPCSTYFGVSSFGHLIYFFEGGVSESAFSLSRGSPTFEVESLGAVTKRYFIVVLLLKFNAALFSDTSFCCAHGSLVLILSRVYISLVSAMVLLRCFSMTLLQWCFLACLVCLSLGLNNNQAPCDPHDLSALKKFAGELTSGSIIAAWSNDSVCCNWRGVVCDNVTGGGGTVTSRVTKLILPEMGLNGTISPSLAHLDQLSVLNLSLNHLKGGLPVEFSQLKLLKFLDVSHNMLSGPVAGALSGLQSIEVLNISSNSLSGVLFPFGEFPRLHALNVSNNSFTGGFNSQICSATKELHTLDLSANNFIGGLEGLDNCTASLQRLHLDSNSFTGPLPDSLYSMLALEELSVSSNNISGQLSKQLSKLSNLKILVLCGNRFSGELPNVFGNLLQLEELEAHGNSFSGSLPSTLASCSKLRVLNLRNNSFSGPIGLNFTGLSNLQTLDLATNNFTGHLPTSLSFCRELKVLSLARNGLTGSIPENYANLSSLLFVSFSNNSIENLSRAVSVLQQCKNLTTLILTKNFHGEEIRESTIVGFESLMILALGNCGLKGHIPSWLSNCRKLAVLDLSWNRLNGSVPSWIGQMDSLFYMDFSNNSLTGEIPKSLTELKGLMCANCNRENLAAFAFIPLFVKRNTSASGLQYNQASSFPPSIYLSNNILSGNIWPEIGQLKALHVLDLSRNNITGTIPSTISEMENLETLDLSYNDLTGEIPSSFNNLTFLSKFSVAYNRLEGSIPTGNQFLSFPSSSFEGNQGLCREIDSPCKIVNNTKPISSSGSSKKLGRSNVLGITVSIGIGLALLLAFILLRMSRGDDDKPIDNYDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDESAALKWDARLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWHKDQEKQLLEVFAIACKCLDQDPRQRPAIEVVVSWLDSVRFDGSHQ 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01399 1157 SUPERFAMILY L domain-like 136 417 - -
Vimu4g01399 1157 Pfam Protein kinase domain 877 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01399 1157 Gene3D Ribonuclease Inhibitor 136 369 IPR032675 -
Vimu4g01399 1157 Gene3D Ribonuclease Inhibitor 370 470 IPR032675 -
Vimu4g01399 1157 SUPERFAMILY L domain-like 653 780 - -
Vimu4g01399 1157 FunFam Phytosulfokine receptor 1 839 951 - -
Vimu4g01399 1157 ProSiteProfiles Leucine-rich repeat profile. 709 731 IPR001611 GO:0005515
Vimu4g01399 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Vimu4g01399 1157 Pfam Leucine rich repeat N-terminal domain 139 176 IPR013210 -
Vimu4g01399 1157 ProSiteProfiles Leucine-rich repeat profile. 308 330 IPR001611 GO:0005515
Vimu4g01399 1157 ProSiteProfiles Protein kinase domain profile. 876 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01399 1157 SMART LRR_typ_2 683 706 IPR003591 -
Vimu4g01399 1157 SMART LRR_typ_2 498 521 IPR003591 -
Vimu4g01399 1157 SMART LRR_typ_2 210 233 IPR003591 -
Vimu4g01399 1157 SMART LRR_typ_2 707 730 IPR003591 -
Vimu4g01399 1157 SMART LRR_typ_2 378 401 IPR003591 -
Vimu4g01399 1157 SMART LRR_typ_2 234 257 IPR003591 -
Vimu4g01399 1157 SMART LRR_typ_2 450 474 IPR003591 -
Vimu4g01399 1157 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 348 443 - -
Vimu4g01399 1157 SUPERFAMILY Protein kinase-like (PK-like) 858 1147 IPR011009 -
Vimu4g01399 1157 PRINTS Leucine-rich repeat signature 707 720 - -
Vimu4g01399 1157 PRINTS Leucine-rich repeat signature 686 699 - -
Vimu4g01399 1157 Gene3D Ribonuclease Inhibitor 473 780 IPR032675 -
Vimu4g01399 1157 Pfam Leucine rich repeat 428 487 IPR001611 GO:0005515
Vimu4g01399 1157 Pfam Leucine rich repeat 685 744 IPR001611 GO:0005515
Vimu4g01399 1157 FunFam Leucine-rich repeat receptor-like kinase 140 260 - -
Vimu4g01399 1157 SUPERFAMILY RNI-like 328 630 - -
Vimu4g01399 1157 CDD STKc_IRAK 882 1148 - -
Vimu4g01399 1157 FunFam Leucine-rich repeat receptor-like protein kinase 952 1157 - -
Vimu4g01399 1157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 356 1148 - -
Vimu4g01399 1157 ProSitePatterns Protein kinases ATP-binding region signature. 882 904 IPR017441 GO:0005524
Vimu4g01399 1157 FunFam Tyrosine-sulfated glycopeptide receptor 1 447 781 - -
Vimu4g01399 1157 Gene3D Phosphorylase Kinase; domain 1 839 951 - -
Vimu4g01399 1157 Gene3D Transferase(Phosphotransferase) domain 1 952 1153 - -
Vimu4g01399 1157 SMART serkin_6 876 1147 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01399 Vimu-Chr4 14479382 14482985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01399 142 1153 Receptor kinase-like Gene Family AT1G55610 34.489 1.37e-164 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu4g01399 Pkinase 8.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01399 - - gmx:100797812 1837.39