Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01393 ATGGACCTTCAGATACCTGTTTTTTGTCTCTTTCTGTTTCTCTTGAGTCTGCTCTCGGGGTCTCAGGCCTACACCTTCTACGTTGGTGCGAAAGATGGGTGGGTTTTGTACCCTTCTGAGAATTACAATCACTGGGCTGAAAGGATGAGGTTCCAAGTCAGTGACACTCTTGTTTTTAAGTACAAGAAGGGATCGGACTCGGTTTTGGTGGTCAACAAGGAGGATTATGAGAAATGTAACAAGAACAACCCGATCAAGAAGTTTGAGGATGGTGACTCCGAGTTTCAGTTTGATCGCTCCGGTCCCTTTTATTTCATCAGTGGAAAAGATGATTACTGTGAGAAGGGTCAGAAACTTATCATTGTGGTGTTGGCTGTGAGGGAGCCTCCTCCATATTCTCCATCGCCACCAAATCTTCCACCTCCTCCAAAAACTCCTTATCCACCCCATCTTCCTCCAAAAGCACCTTCACCCTCTTATCATCCACCCCATCTTCCATCACCTCCACTTCCTCCTATTCCTTCCCCTACCCATCCACCACCCTTTGTTCCAATAACACCATCGCCATTTTCTCAATCACCTTATGTGCAACCACCACCCAAAACTCCATCTCCTACTTCTCAACCACCGCCCAACACTCCTTCCCCCACCTCACAACCACCTTACATTTCCCCACCACCATCCACCGCCCCTTCTCCCATTTCCCAACCTCCCTACATTCCAAAACCTCCAACATCTCAACCACCCTACCCTAATGCCCCAACTCCATATCCCAATTCCCCTATCATTCAACCCCCATCATCAGCATCATCTCCAACTTCCTCATCACCCTATCCATCCACCATCCCTCCATCATACCCACCTTCCCCCTTCGCTCCGGCTACTACACCCTCTACTGCGTCACCACCAATACCGTCTCCGGCAACCGCCACTTCTCCTCCGGCACCACTACCGGCAGCAACAAGCCCATCGCCGTCGTCTTCGTCGGGATCGTCCTCGAACGAAACGACGCCGTCCCGGCCAAACGGCGCGTCGTCTGTATCCGAATCGCGTTTTGGAGTGTACTCACTAACCATTCTGGTCGGTGCTGCTCTCAGTACCATTCTTGGTTAG 1113 0.5076 MDLQIPVFCLFLFLLSLLSGSQAYTFYVGAKDGWVLYPSENYNHWAERMRFQVSDTLVFKYKKGSDSVLVVNKEDYEKCNKNNPIKKFEDGDSEFQFDRSGPFYFISGKDDYCEKGQKLIIVVLAVREPPPYSPSPPNLPPPPKTPYPPHLPPKAPSPSYHPPHLPSPPLPPIPSPTHPPPFVPITPSPFSQSPYVQPPPKTPSPTSQPPPNTPSPTSQPPYISPPPSTAPSPISQPPYIPKPPTSQPPYPNAPTPYPNSPIIQPPSSASSPTSSSPYPSTIPPSYPPSPFAPATTPSTASPPIPSPATATSPPAPLPAATSPSPSSSSGSSSNETTPSRPNGASSVSESRFGVYSLTILVGAALSTILG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01393 370 PRINTS Proline rich extensin signature 189 214 - -
Vimu4g01393 370 PRINTS Proline rich extensin signature 168 185 - -
Vimu4g01393 370 PRINTS Proline rich extensin signature 125 146 - -
Vimu4g01393 370 PRINTS Proline rich extensin signature 151 167 - -
Vimu4g01393 370 PANTHER BLUE COPPER PROTEIN 24 215 IPR039391 GO:0009055
Vimu4g01393 370 MobiDBLite consensus disorder prediction 131 265 - -
Vimu4g01393 370 MobiDBLite consensus disorder prediction 131 351 - -
Vimu4g01393 370 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055
Vimu4g01393 370 MobiDBLite consensus disorder prediction 277 321 - -
Vimu4g01393 370 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Vimu4g01393 370 MobiDBLite consensus disorder prediction 322 351 - -
Vimu4g01393 370 CDD OsENODL1_like 24 124 IPR041846 -
Vimu4g01393 370 Pfam Plastocyanin-like domain 34 117 IPR003245 GO:0009055
Vimu4g01393 370 Gene3D - 22 127 IPR008972 -
Vimu4g01393 370 FunFam Early nodulin-like protein 1 23 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01393 Vimu-Chr4 14381446 14382644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01393 1 184 Phytocyanin Superfamily AT5G53870 39.130 6.40e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01393 - - var:108333029 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01393 4 14381446 14382644 Vimu4g01393 4 14381446 14382644 ECH