Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01379 ATGTGTTGTTGTACTTGGCCTACATGTAACTCTAGCTGGATGAAGATGGAGGGTTCTTCAGGATCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAACAGTTCTGGAGTCTCGGATAGGAACCGAAGAGTTCATTATCCTGAAAGGAACCCCTTCTCGGGTGAGGCATCTCAGGATTCGGGGTTTAAGAAGGAAAGGGAAAGGGTTCCGTTGGGTCAAGGTGATCAGGCAAAAAATTTGGGTGGTGGGTTTTCTGGGTTTTGTGAAGATGAAGTGGAGGTTGAACCCTTTTATGGTGCTGTGGAATGGGGTGATATTAGCTTGAGGCAGTGGTTGGATAAACCAGAACGATCGGTGGATGCCTTTGAATGCTTGCACATATTTAGACAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCTTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCCGATTCTTTAGGAGAAGGACTAAACGACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGCTTGGGAAGTGAAGATTTTGTGACTGTCAAGACTTCTACAACCACTGCTCGCTCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAACATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTAGAAGGGAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTATACTAGTCCTGAAGAGGTTGCTGGTGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTAGGGGTTCTTCTTTTTGAGCTATTTTGTCCGCTAAGCTCGAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCCAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGTGAGTTCCTTAATGAACAAAGAGATGATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATAGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTGTTACTTCAACAGAGGAAACAGGAAGTTGCTGAGAAGTTGCAACATACTATCTCTTTTCTGTGCTCAGATATTGAAGAAGTGACTAAGCAGCAAACTAGATTTAAAGAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAATTTCCCATCAATGACAGTTGTGGACAGTGATGATTCTGCATATGTAGGGACTAGAAAACGAGTGAGACTAGGGACTCATGTTAAAAACAATGAGGAATGTGATGATGATGATGATGGAGGAGATGATCAGAAAAGTAACGGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTCAAGAAACTGGAGTCAGCATACTTTTTAACAAGATGTAGACCGGCATATTCCTCTGGGAAACTGGTGAGTAGGCATCCTCCTCTAACAAGTGATGGTAGAGGTTCTGTTGTTTTGACAGAAAGAAGTTGCATCAATGACTTGAAATCAAAAGAGCAGTGCAGGGAGGGAGCAAGTGCTTGGATAAATCCTTTTTTAGAGGGTTTGTGCAAGTATTTATCATTCAGCAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTTGTATGCTCACTCAGTTTTGATCGAGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAGATTAAAGTGTTTGAATGTGATTCAATCATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTGTGGGATGTGACAAGAAGCCAAGTACTCTCTGAGATGAGGGAGCACGAGCGGCGTGTGTGGTCCATTGATTTCTCGTCAGCAGATCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGTGGATGGAGTTAGTGTTGGAACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTCCCTCTGGATTCTTCTCGTTTCCTTGCATTTGGTTCAGCAGATCATCGGATATATTACTATGATCTTCGCAACCTTAAAATGCCGCTGTGTACTTTGGTTGGACATAACAAGACTGTCAGCTACATCAAGTTTGTAGACACCGTCAACCTTGTCTCAGCTTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTACGTGTGCATCTCGAGTTATAGACTCACCGATTCAATCTTTCACAGGTCACGTCAATGTCAAGAACTTTGTGGGATTATCAGTGTCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTTTTCATATACCACAAAGCCTTCCCCATGCCTGCACTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCCGGTAACGAAGTGGATGACGCGGCGCAGTTCGTGTCATCGGTTTGTTGGCGGGGTCAGTCGTCCACCTTGCTCGCCGCAAATTCGACGGGGAATGTCAAAATTCTGGAAATGGTTTAG 2754 0.4296 MCCCTWPTCNSSWMKMEGSSGSAFQNSGSSRALNSSGVSDRNRRVHYPERNPFSGEASQDSGFKKERERVPLGQGDQAKNLGGGFSGFCEDEVEVEPFYGAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNDQGGEIKTPTSLCPHDMHQQSLGSEDFVTVKTSTTTARSDSSCMLSSAVYAARASLIEETEEHKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGDSSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQQTRFKEITGTELGSDDRSASNFPSMTVVDSDDSAYVGTRKRVRLGTHVKNNEECDDDDDGGDDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLVSRHPPLTSDGRGSVVLTERSCINDLKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQAIPFLHLVDGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGNEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01379 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 721 - -
Vimu4g01379 917 ProSitePatterns Trp-Asp (WD) repeats signature. 799 813 IPR019775 -
Vimu4g01379 917 PANTHER PROTEIN SPA1-RELATED 2 59 917 IPR044630 GO:0009640
Vimu4g01379 917 Pfam WD domain, G-beta repeat 596 625 IPR001680 GO:0005515
Vimu4g01379 917 Pfam WD domain, G-beta repeat 682 719 IPR001680 GO:0005515
Vimu4g01379 917 Pfam WD domain, G-beta repeat 777 812 IPR001680 GO:0005515
Vimu4g01379 917 Gene3D - 572 917 IPR015943 GO:0005515
Vimu4g01379 917 SUPERFAMILY Protein kinase-like (PK-like) 98 366 IPR011009 -
Vimu4g01379 917 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 569 917 - -
Vimu4g01379 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 721 IPR001680 GO:0005515
Vimu4g01379 917 Gene3D Transferase(Phosphotransferase) domain 1 106 376 - -
Vimu4g01379 917 SUPERFAMILY WD40 repeat-like 596 914 IPR036322 GO:0005515
Vimu4g01379 917 MobiDBLite consensus disorder prediction 20 69 - -
Vimu4g01379 917 ProSiteProfiles Protein kinase domain profile. 9 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01379 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 815 IPR001680 GO:0005515
Vimu4g01379 917 Coils Coil 361 381 - -
Vimu4g01379 917 MobiDBLite consensus disorder prediction 475 495 - -
Vimu4g01379 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 781 815 - -
Vimu4g01379 917 SMART WD40_4 821 860 IPR001680 GO:0005515
Vimu4g01379 917 SMART WD40_4 774 812 IPR001680 GO:0005515
Vimu4g01379 917 SMART WD40_4 679 719 IPR001680 GO:0005515
Vimu4g01379 917 SMART WD40_4 591 626 IPR001680 GO:0005515
Vimu4g01379 917 SMART WD40_4 731 770 IPR001680 GO:0005515
Vimu4g01379 917 SMART WD40_4 637 676 IPR001680 GO:0005515
Vimu4g01379 917 SMART WD40_4 876 915 IPR001680 GO:0005515
Vimu4g01379 917 PRINTS G protein beta WD-40 repeat signature 799 813 IPR020472 -
Vimu4g01379 917 PRINTS G protein beta WD-40 repeat signature 706 720 IPR020472 -
Vimu4g01379 917 PRINTS G protein beta WD-40 repeat signature 663 677 IPR020472 -
Vimu4g01379 917 MobiDBLite consensus disorder prediction 20 41 - -
Vimu4g01379 917 SMART serkin_6 13 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01379 Vimu-Chr4 14189668 14194187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01379 676 859 Miscellaneous Gene Families AT5G08390 25.946 2.33e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vimu4g01379 WD40 0.00011 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01379 K26557 - gmx:100811457 1684.85