Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01375 ATGAGCATGTTAGGCCTTAGAGACCTAGTGCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAACCAATGAGATTCAAGACTGTGCTGCTGCTGCTGGTGGCAACACCACCACCACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATCAACATGGATGATGATGATGATGATGATGAGGACGACGAGAGACATCATCACCATAAGGGTGTGATGGAGAGCGAAGAAAACGGAATTTATGGACCTGACTTCCGGGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGGCGTGGATACGATTGCAGCACTCATGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAACGGGAAATGGTGGTGGCTCCCGCCGGAGGCGTTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCCTCACAAAATGCCACTGCCACTTCTCACAGCTCCAACTCCAATGCCACAACGCCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGATGCTAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTTTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACGGTGCACATCAGTGGCCATGTGTTCAAAGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAATTGCAACTGGGAAACAATTGCAGTGGCAAGAACAGAGAATGTTCTTCTGCCATTGGACTTCCAAATAAAAATGCATACCCTGCTTCTGCCACCTGA 999 0.4995 MSMLGLRDLVLIAQTPSLHQGQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQDCAAAAGGNTTTTTTTNYWNLKMCPEVNPPKKGVINMDDDDDDDEDDERHHHHKGVMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVAPAGGVGGGSKRPRAIVGSSQNATATSHSSNSNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAVPCVSELQLGNNCSGKNRECSSAIGLPNKNAYPASAT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01375 332 MobiDBLite consensus disorder prediction 188 224 - -
Vimu4g01375 332 NCBIfam LRP1 C-terminal domain 241 288 IPR006511 -
Vimu4g01375 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 82 318 IPR007818 GO:0003700|GO:0006355
Vimu4g01375 332 MobiDBLite consensus disorder prediction 201 224 - -
Vimu4g01375 332 Pfam Domain of unknown function (DUF702) 137 289 - -
Vimu4g01375 332 NCBIfam putative zinc finger domain, LRP1 type 137 179 IPR006510 -
Vimu4g01375 332 MobiDBLite consensus disorder prediction 102 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01375 Vimu-Chr4 14061061 14062326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01375 138 318 C2H2 Transcription Factor Family AT5G12330 53.886 1.66e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu4g01375 DUF702 2.1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01375 - - vun:114175485 591.652