Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01344 ATGTTCTTCTGGGTAATGGAAATGGGGCCAAATGAACGTGATCTTGTGCATAACAATTTACATGCTTGGACATTGGCTACTGCATTTGAAGGAGTTTATGCTAGAATAGGACAAAATCTTAGAACTTCCAAGAAATTGCCACGGTTGGTGAACTATGGAATGCATGGTCAGGCAATAAATTGTGGGGAATGTGCCATTTGCTTGGAAGAGTTTCAAGCCAATGAATTATGTCAAGTTTTTCCTATGTGCAAACACATTTTCCATTCGGATTGCATCAATCACTGTTCTAGTGACTCCCTCGCCGCCCCTTCCCCTCCGCGTCGTCGTTATTCTCCTTCTCCCTTGTTGTGCCTCTGCTTCTCTCTCTCGCGCCCGCCTCGCATCTGCCTCCTTTGCTGCCACCATTATCAACCTAAAATAAAAGAAGATGAGGCTCAGAAGAAGATTAGAAAAAACGTAGAGGATGAACTTGTGCGTGCTCTTCGGGTTGAGCGCGAGGGGCCAATGAGTACATCTCTATCGCAACGCTGCCTTCGAGCGCCGGTTTTGCCTTTTCGTCAACGATGGCAACCGGATTTCCCAGCGAGGACGAGGATGGTCACAACAAAGCCTGTTTGGAGGATGCCTTTGCTGGAAGAAGAAAACACTGAAGAGTCAAATAAAAATGACGAAAATCAGTGGTTCTGGATCAAGAGTGATTTACAAACACCTGCTGCAGTGAAGCCGTTGAGCATACCAGAACCTTCACTGAGATTTTACGGCTTCAACAGATTTTAG 777 0.4582 MFFWVMEMGPNERDLVHNNLHAWTLATAFEGVYARIGQNLRTSKKLPRLVNYGMHGQAINCGECAICLEEFQANELCQVFPMCKHIFHSDCINHCSSDSLAAPSPPRRRYSPSPLLCLCFSLSRPPRICLLCCHHYQPKIKEDEAQKKIRKNVEDELVRALRVEREGPMSTSLSQRCLRAPVLPFRQRWQPDFPARTRMVTTKPVWRMPLLEEENTEESNKNDENQWFWIKSDLQTPAAVKPLSIPEPSLRFYGFNRF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01344 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 109 IPR013083 -
Vimu4g01344 258 Pfam RING-like zinc finger 63 92 IPR001841 -
Vimu4g01344 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 93 - -
Vimu4g01344 258 SUPERFAMILY RING/U-box 63 95 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01344 46 104 C3H Transcription Factor Family AT1G53010 40.625 5.75e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01344 - - gmx:102660073 143.28