Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01340 ATGGAATTATTTGTATTATCTGCAGGTGGTTTAACGCAGTCGAAAATAATGAATTTGCGAGGTTGGGTGCAAGGGAGAAAGGTATTGGTGTTGATTGTCAGTGGGGCGAGTCATAACCTTATTTCCACCCGATTGGTGGAGGAATCGGGGCTGAAAAGTGAGGATGTGCCCCCTTATAATGTATATTTAGGTGATGGGGCTGCCTTGTCTTATGATGGAAACTGCTGGTTGTTATGTTTGACAACAGATAGTTTAGCTGATGCTAGATATCCAGGTGCTGCTTCACTGGGTGATGCGGTTGGTGGCATGGCCACGACAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGAAGGGATTACAAAGCAATCGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATATGTGGAAGTTTTTGTCGACTAAAAGGTCAAGATAACCTGACTAATGTTATGATTTTAATATACCGTGGAATAAGTGGCCAAGATTATGAGAAGTTACCAGTTGGATTTTTTTATAGAAATGGAGAATTTATTCAGAGTTCTATAATAGCAAACAAGAGAATTGATGTTGGTGGAAATATACTTGGTTGTTTTTGCTTCTTGCAGGTTGTAACGTCAGATCTGAATCAGTTCTCCGAAGAACACAAGCCAATAAGCAGAGAAAAC 807 0.4102 MELFVLSAGGLTQSKIMNLRGWVQGRKVLVLIVSGASHNLISTRLVEESGLKSEDVPPYNVYLGDGAALSYDGNCWLLCLTTDSLADARYPGAASLGDAVGGMATTRINSKHFLFWFRSHTAKEVKWGRDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPGEICGSFCRLKGQDNLTNVMILIYRGISGQDYEKLPVGFFYRNGEFIQSSIIANKRIDVGGNILGCFCFLQVVTSDLNQFSEEHKPISREN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01340 269 SMART pas_2 129 199 IPR000014 -
Vimu4g01340 269 Gene3D - 78 144 IPR043150 -
Vimu4g01340 269 ProSiteProfiles PAS repeat profile. 130 175 IPR000014 -
Vimu4g01340 269 SUPERFAMILY GAF domain-like 64 128 - -
Vimu4g01340 269 Pfam PAS fold 130 250 IPR013767 GO:0006355
Vimu4g01340 269 FunFam Phytochrome 143 251 - -
Vimu4g01340 269 SUPERFAMILY PYP-like sensor domain (PAS domain) 144 246 IPR035965 -
Vimu4g01340 269 CDD retropepsin_like 19 83 - -
Vimu4g01340 269 Pfam Phytochrome region 80 129 IPR013515 GO:0006355|GO:0009584
Vimu4g01340 269 CDD PAS 141 251 IPR000014 -
Vimu4g01340 269 Gene3D PAS domain 145 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01340 Vimu-Chr4 13522059 13522886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01340 130 263 Histidine Kinase Gene Family AT4G16250 56.716 4.97e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01340 K12123 - gmx:100808192 240.35