Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01323 ATGCACCTCTGGAGTTCGTTTTTGAAGGTTGCGTTGATTGCTCCAACTACTACCCTTTTCGTTCTTCTTCTCACCCTTTTGGACCTTATTATTTTGAACCACCTCCAGACAAGAAAAATACGTTTTTATTTTTCATTTTCCTCGTCAATTCTGAAATGGGTTGGTGGAATCAGGAGATGGGGTCTTGCTACAATGTCTGCTCTATCGAGGAGTTCGCTGGAGGAGATGCTTGAGTCGCTTCGCAAGAGAGACGAGGAGGAGAGGCCGAAGGACTTACCGCCGGCATTGCCGTCGCGGCCGCAGTCGAGGGCGCGCATGCCTCCGGCGAGGAGGTCGTTGCCTAATAACTTCAAGGTTGATGGCAATAATGATCAGAAGGGGCACAAAAGGAAGGGTAGTTTTGGGTCCAAGAAGGTCAAGTTGCGTGTGGAATCCCCTTATGCAGTCATATCAGAAGAGAAAGTGAATGAACAACCATCGTCTCCGGTTCCAACAGCGAATGATTCTTCTACTGATTGTGAAGCTCCTCCTCAGTCTGAGGAGTTGGAAGATGATAACGTCGCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAGAGGGAAGTGGGAGCTGGGAACGATACAGTCAACTTCTGGAGAGGAAGCATCTGTTTCTCTCTCAAATGGAAATGTTTTGAAAGTAGCCAGGTCAGATCTCCTACCAGCTAATCCTGATATTTTGGAGGGTATTGAAGATCTTATACAGCTCAGTTACTTAAATGAGCCTTCAGTTCTTCACAATCTTCAGTATAGATATGCTCAGGATATGATTTATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAAATGTCGAAGTTTATGGAAATGATTATGTTCTAGCTTATAGGCAGAAACTTACCGATAGTCCTCATGTTTATGCTTTGACAGATGCAGCTTATAATGAGATGATGACAGGTGAAGTAAATCAGTCTATTATCATAAGTGGTGAAAGTGGAGCTGGGAAAACAGAGACCGCCAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCTGTTCAGGAATAGAAAATGAAATCCTTCAGACAAATTTTATTCTGGAGGCTTTTGGGAATGCAAAAACATCTAGGAATGATAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCACAATGGGGAAAATTTGTGGTGCAAAAGTTCAAACTTTTCTGTTAGAAAAGTCAAGAGTTGTTCAACTTGCCTTGGGTGAGAGGTCATATCACATATTTTATCAACTTTGTGCGGGATCTTCTTCCAAACTAAAAGAAAGACTGAATCTTAGGGCGGCTAGCGAATATAAATATCTTAACCAAAGTGACTGCACAACAATTGATGGTGTTGATGATGCTAAAAAGTTTAAAAGGCTGATGAAAGCATTGGATGTTATTCAAATGGGCAAAGAAGATCAAGAGCTAGTTTTTAAGATGCTGGCTGCGATATTATGGTTGGGAAATATATCATTCCAAGATAGTGATAATGAAAATCACATTGAGGTGGTGAATGATGAAGCTGTAACAAATGCTGCTGTGCTAATGGGGTGCAGTTCTCAGGAGCTAATGGCAGTGTTATCTACCCATAAAATCCAAGCTGGCAAGGATACTATTACCAAGAAATTAACCTTGCGGCAGGCAATTGATGCAAGAGATGCAATAGCAAAATTTATCTATGCAAGCTTGTTTAACTGGCTTGTAGAACAAGTTAACAAGTCACTTCAAGTAGGTAAACGGTGTACTGGGAGATCTATAAGTATCCTTGATATTTATGGATTTGAGTCATTCCAGGACTATGAATTAGATGGTATTGATTGGACCAGAGTAGAGTTTGAGGACAACCAAGTGTGTTTGGATCTCTTTGAAAAGAAGCCTCTTGGGCTATTCTCTCTGTTAGACGAGGAATCTAATTTCCCCAAGGCCAGTGATCTAACACTAGCCAACAAACTTAAGCAGCACCTGCACTCTAATCCTTGCTTTAAAGGGGAAAGAGGCAGGGCTTTTAGTGTCTCTCATTATGCTGGGGAGGTTTTGTATGATACAAGTGGCTTCCTAGAAAAGAATAGAGATCCACTACCATCTGATTCCATTCAACTACTGTCATCATGTAGCTGTGAACTGCTGCAGTTGTTCCCCAAGAAGCTTAATCAGTCTCAGAAGCAATCAAATTCCTCGCATGGAGGTGCTCTGGACTCAAAAAAGCAGAGTGTTGGCACTAAGTTCAAGCTGGAGAGCACCACACCTCACTTTATTCGCTGTATAAAGCCAAATACTAAGCAACTTCCTGGAATATATGAACAAGATCTTGTACTACAACAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCGAGGGCTGGATATCCTACTCGAATGACACATCAAGAATTTTCCAGAAGGTATGGGTTTCTGCTTGTTGAGGCAAACACATCTCAGGACCCATTGAGCATTTCGGTTGCGGTTTTGCAACAATTTAATATCCCTCCCGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACTGGGCAGATTGGGGCACTGGAGGACAGGAGAAAATATCTTTTGCAGGGACTACTTGGTATTCAAAAAAGCTTTCGTGGTTATCAAGCTCGCCGTCGTTACCATGAGCTGAAGAAGGGAGTGACTACTTTACAATCATTTGTTCGGGGAGAAATTGGAAGAAGGGAGTATGGTGTTATGGTGAAGTCTTCTATGACTATTTCTTCTGAAAATGTTAAGGAAATGCTGGCAGCCACAACACTACAATCTGTAATTCGTGGATGGCTGGTTCGGAGGAATGCCAGTGACTTCAATAACTCAAAGAAAAGTCGTGAAAATGCAAGATCTAGGCGAAGGTCACGTGTGAAGATGCCCGAAGAAAAGGTGTATGAGAACGCATATCCCCGTGTTTGTGATCGGCTCCCGAATTTACCTGCAGCTTTAGCTGAACTCCAGAGGCGGGTTGTCAAGGCTGAAGCTACCATAGAGCAAAAGGAAGGGGAAAATGCTGAATTGAAGGATCAGCTAAATCAGTTTGAGAGTAGATGGATTCAATACGAGAAAAGGATGAAATCAATGGAGGATATGTGGCAAAAACAAATGGCATCTTTGCAGACGAGCCTTGCTTCTGCTAGAAAGAGCCTTGCTTCTGAGAATGCCAACAATCAACATGCAAGACGTGATGTATCATCACCTTTACCCTATGATTCAGAAGATGCTATTTCCATGGGATCTCGAACACCTAGTGCAAGCACACCTTTGAAGTATTCTGCTAGCATTTCTGAATCTGCACTAGGGAGAGATGGTCATGGTGCTTTGGCTTCAGTGGGCCACCTTGCTAGGGAATTTGATCACCGTAGACAGACATTTGATTATGATGCCAGAAATTTGGTTGAGCTTAGAGCAGGTCAATCTGCTAACACAAATTCCGTTGAAGAACTTCGGAAACTCAAACATAGGTTTGAGGTGTGGAAGAAAGACTACAAGGTTAGATTAAAAGAAACAAAAGCAAGACTTCAAAAGGTGGGGAATTCAGAAATGGATAAAAGGCGGAGATGGTGGGGGAAACTGAGTTCCAGAGCACTATAG 3660 0.4219 MHLWSSFLKVALIAPTTTLFVLLLTLLDLIILNHLQTRKIRFYFSFSSSILKWVGGIRRWGLATMSALSRSSLEEMLESLRKRDEEERPKDLPPALPSRPQSRARMPPARRSLPNNFKVDGNNDQKGHKRKGSFGSKKVKLRVESPYAVISEEKVNEQPSSPVPTANDSSTDCEAPPQSEELEDDNVAYFIKKKLHVWCRQPRGKWELGTIQSTSGEEASVSLSNGNVLKVARSDLLPANPDILEGIEDLIQLSYLNEPSVLHNLQYRYAQDMIYSKAGPILIALNPFKNVEVYGNDYVLAYRQKLTDSPHVYALTDAAYNEMMTGEVNQSIIISGESGAGKTETAKIAMQYLAALGGGCSGIENEILQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSTMGKICGAKVQTFLLEKSRVVQLALGERSYHIFYQLCAGSSSKLKERLNLRAASEYKYLNQSDCTTIDGVDDAKKFKRLMKALDVIQMGKEDQELVFKMLAAILWLGNISFQDSDNENHIEVVNDEAVTNAAVLMGCSSQELMAVLSTHKIQAGKDTITKKLTLRQAIDARDAIAKFIYASLFNWLVEQVNKSLQVGKRCTGRSISILDIYGFESFQDYELDGIDWTRVEFEDNQVCLDLFEKKPLGLFSLLDEESNFPKASDLTLANKLKQHLHSNPCFKGERGRAFSVSHYAGEVLYDTSGFLEKNRDPLPSDSIQLLSSCSCELLQLFPKKLNQSQKQSNSSHGGALDSKKQSVGTKFKLESTTPHFIRCIKPNTKQLPGIYEQDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFSRRYGFLLVEANTSQDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQIGALEDRRKYLLQGLLGIQKSFRGYQARRRYHELKKGVTTLQSFVRGEIGRREYGVMVKSSMTISSENVKEMLAATTLQSVIRGWLVRRNASDFNNSKKSRENARSRRRSRVKMPEEKVYENAYPRVCDRLPNLPAALAELQRRVVKAEATIEQKEGENAELKDQLNQFESRWIQYEKRMKSMEDMWQKQMASLQTSLASARKSLASENANNQHARRDVSSPLPYDSEDAISMGSRTPSASTPLKYSASISESALGRDGHGALASVGHLAREFDHRRQTFDYDARNLVELRAGQSANTNSVEELRKLKHRFEVWKKDYKVRLKETKARLQKVGNSEMDKRRRWWGKLSSRAL 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01323 1219 MobiDBLite consensus disorder prediction 154 176 - -
Vimu4g01323 1219 PANTHER MYOSIN 238 1206 - -
Vimu4g01323 1219 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 192 241 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 Coils Coil 1005 1046 - -
Vimu4g01323 1219 Pfam Myosin head (motor domain) 618 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 Pfam Myosin head (motor domain) 248 617 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 SMART MYSc_2a 239 877 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 CDD MYSc_Myo8 259 864 IPR036022 -
Vimu4g01323 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 926 IPR027417 -
Vimu4g01323 1219 Pfam IQ calmodulin-binding motif 941 957 IPR000048 GO:0005515
Vimu4g01323 1219 Pfam IQ calmodulin-binding motif 885 899 IPR000048 GO:0005515
Vimu4g01323 1219 SMART iq_5 877 899 IPR000048 GO:0005515
Vimu4g01323 1219 SMART iq_5 937 959 IPR000048 GO:0005515
Vimu4g01323 1219 SMART iq_5 900 922 IPR000048 GO:0005515
Vimu4g01323 1219 Gene3D Kinesin motor domain 767 809 IPR036961 -
Vimu4g01323 1219 FunFam Myosin IE heavy chain 485 593 - -
Vimu4g01323 1219 MobiDBLite consensus disorder prediction 150 181 - -
Vimu4g01323 1219 ProSiteProfiles IQ motif profile. 938 967 IPR000048 GO:0005515
Vimu4g01323 1219 Gene3D Myosin VI head, motor domain, U50 subdomain 489 596 - -
Vimu4g01323 1219 FunFam Myosin heavy chain 428 484 - -
Vimu4g01323 1219 Gene3D Kinesin motor domain 248 613 IPR036961 -
Vimu4g01323 1219 Gene3D - 620 766 - -
Vimu4g01323 1219 ProSiteProfiles Myosin motor domain profile. 245 876 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 MobiDBLite consensus disorder prediction 79 137 - -
Vimu4g01323 1219 Gene3D - 810 877 - -
Vimu4g01323 1219 MobiDBLite consensus disorder prediction 79 93 - -
Vimu4g01323 1219 Gene3D - 883 929 - -
Vimu4g01323 1219 MobiDBLite consensus disorder prediction 1073 1111 - -
Vimu4g01323 1219 Gene3D - 428 487 - -
Vimu4g01323 1219 ProSiteProfiles IQ motif profile. 878 907 IPR000048 GO:0005515
Vimu4g01323 1219 ProSiteProfiles IQ motif profile. 901 930 IPR000048 GO:0005515
Vimu4g01323 1219 PRINTS Myosin heavy chain signature 604 632 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 PRINTS Myosin heavy chain signature 329 354 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 PRINTS Myosin heavy chain signature 372 399 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu4g01323 1219 PRINTS Myosin heavy chain signature 275 294 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01323 Vimu-Chr4 13112607 13135790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01323 63 1213 Myosins gene family AT5G54280 58.847 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01323 K10357 - gmx:100801876 1882.07