Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01322 ATGGCAGCAACATTGATGGCAGCAACAAGTGGTTCTGGCACTGTTCTTAAACCAACTCCTTTCCTAGGGCAAGGAAAGGCTTCAAATGGCAACCCTCTTAGGGATGTTGTCTCAATGGGAAGTGGGAAATACAGCATGAAGAGCAATGAGCTGTGGTATGGACCAGACAGAGTGAAATACTTAGGACCGTTTTCAGCTCAAACACCTTCATACTTGAAGGGAGAATTTCCAGGTGATTATGGATGGGACACTGCTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCCATGCTCGGAGCCCTGGGCTGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGTTCAAAGCTGGGGCCCAGATATTCTCAGAAGGTGGGCTTGACTATTTGGGCAACCCAAACCTTGTCCATGCCCAAAGCATCTTGGCAGTGCTGGGCTTCCAAGTTGTTCTGATGGGCCTTGTTGAAGGGTTCCGCATCAATGGGCTCGATGGAGTAGGAGAGGGCAACAACCTCTACCCAGGAGGCCAGTACTTTGACCCACTGGGCCTTGCTGATGATCCAGCCACTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTAACTGGTAAAGGCCCATTGGAAAACCTTTTGGACCATCTTGACAACCCAGTGGCTAACAATGCTTGGGTCTATGCTACCAAGTTTGCCCCTGGATCTTAA 813 0.5006 MAATLMAATSGSGTVLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMKSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01322 270 Gene3D Chlorophyll a/b binding protein domain 59 263 - -
Vimu4g01322 270 SUPERFAMILY Chlorophyll a-b binding protein 51 267 - -
Vimu4g01322 270 FunFam Chlorophyll a-b binding protein, chloroplastic 59 263 - -
Vimu4g01322 270 Pfam Chlorophyll A-B binding protein 69 236 IPR022796 -
Vimu4g01322 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 39 269 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01322 Vimu-Chr4 13104328 13105638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01322 1 269 Chloroplast and Mitochondria Gene Families AT2G05070 65.704 1.27e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01322 K08914 - gmx:100779387 518.079