LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g01315	ATGGCCACCTCTCACTATGTTTCAGACTCACGTGTCTCACGCATGCACTACTCCTCCACCGATGACGATCAAGATGATGATGATGAGGAAGACGAGGAAGACAATGACTTCAAATTCTACGACACTAATGTCGATGCCGAAGACGAGCCCAAGAAGCCTGACATCTTTTCCGGCAGCAGTTTCTGGCGGGAGTTCGGGGTGGTACTGGATCCGCGAGCCAAATGGGTCCAAGAATGGAACAGGGTGTTCCTTCTGGTGAGCACCACGGGACTTTTCGTTGATCCGCTGTTCTTCTACGCGCTGTCCATAAGCGACACATGTATGTGCATCTTCATCGACGGCTGGCTCGTAATCACCGTCACCGTGCTTCGGTGCATGACCGATACGTTGCACGTGTGGAACATGTGGCTCCATTTCAAGATGGCTAAACGCTCTTCTTCTCACGCCAGAGACTCTTACGCCTGTAGCGGTGGCTATGCTCTTCGCTACCTCAAGGCTAAGAGGGGTTTCTTCTTCGATCTCTTCGTCATCTTCCCCATTCCCCAGATTGTGTTATGGGTGGTAATTCCGTCTCTTTTGGAGAAAGGATCAATTACGTTAGTGATGACAGTGTTCTTAATCATGTTCCTCTTTCAATATCTTCCCAAAATTTATCACTCGGTTTGCCTCTTGCGTCGCATGCAAAATCTTTCTGGCTACATTTTTGGAACCGTTTGGTGGGGCATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCGTGTTGGTACTTGTTAGGGTTGCAAAGGGCAGCAAAATGTTTGGAAGAACAGTGTGCAAAAACAGCAGGTTGTGGATTGAGAACACTGTGCTGCAAAAAGCCTATATACTATGGAGGAAGTAGCATTGTAAGGGACAAAACCAGATTGGCATGGGCTGAAAACAGGGAAGCAAGGTCTACTTGTTTGGACAGTGCTGATAACTACGACTATGGTGCATACGCATGGTCTGTTCAACTCATCACAAACGATAGCAGATTGGAAAAAATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATAATTGTGCTGACTAGTGGCCTCCTTCTAGTGACTATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCGACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGCAAAAGGAAGTTACCACAAAGTTTCAGGCAGCGCGTGAGAAACTATGAGAGACAGCGTTGGGCTGCCATGCGAGGGGTTGATGAATGCCAAATGATAAAGAATCTCCCAGAGGGACTAAGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTGAGGCAGGTGCCACTGTTTCAGCATATGGACGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTTCCAAAAGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTAGTAAGAGGTCACCTTCAAAGCAGCCAAGTTCTACGAGACGGGGTGAAAAGTTACTGCATGTTAGGGCCAGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTCTGAGAAGGCCGTTCATAGAGCGTCTTCCACCGTCATCAAGCACTTTGGTAACACTTGAAGCGACGGAGGCATTTGGGCTAGAAGCAAAGGACGTGAAGTACGTGACGCAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGGTATTACTCACCAGGATGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCCTGGAGAAGGTATAAGCACCGTTTGACTTTGACATGTTTGTCTTTCATAAGGCCTCGAAGACCTGCCTCAAGGTGTACTTCCATGGAGGAGGATAGGCTTCGTCTTTATACGGCATTGTTAACCTCACCAAAGCCTAATCAGGATCACTTTCACTTCTCATCATAA	2031	0.4712	MATSHYVSDSRVSRMHYSSTDDDQDDDDEEDEEDNDFKFYDTNVDAEDEPKKPDIFSGSSFWREFGVVLDPRAKWVQEWNRVFLLVSTTGLFVDPLFFYALSISDTCMCIFIDGWLVITVTVLRCMTDTLHVWNMWLHFKMAKRSSSHARDSYACSGGYALRYLKAKRGFFFDLFVIFPIPQIVLWVVIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTAGCGLRTLCCKKPIYYGGSSIVRDKTRLAWAENREARSTCLDSADNYDYGAYAWSVQLITNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRKLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFPKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDHFHFSS	676

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g01315	676	Gene3D	Helix hairpin bin	402	468	-	-
	Vimu4g01315	676	FunFam	cyclic nucleotide-gated ion channel 4	475	593	-	-
	Vimu4g01315	676	Pfam	Ion transport protein	79	394	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Vimu4g01315	676	MobiDBLite	consensus disorder prediction	1	34	-	-
	Vimu4g01315	676	FunFam	Cyclic nucleotide-gated ion channel 1	404	468	-	-
	Vimu4g01315	676	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	50	639	-	-
	Vimu4g01315	676	SUPERFAMILY	cAMP-binding domain-like	403	591	IPR018490	-
	Vimu4g01315	676	ProSiteProfiles	cAMP/cGMP binding motif profile.	477	587	IPR000595	-
	Vimu4g01315	676	CDD	CAP_ED	477	583	IPR000595	-
	Vimu4g01315	676	SMART	cnmp_10	477	606	IPR000595	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g01315	Vimu-Chr4	12973229	12979999	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g01315	57	672	Ion Channels	AT5G54250	77.280	0.0	994

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g01315	K05391		-	gmx:100800795	1182.16

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