Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01315 ATGGCCACCTCTCACTATGTTTCAGACTCACGTGTCTCACGCATGCACTACTCCTCCACCGATGACGATCAAGATGATGATGATGAGGAAGACGAGGAAGACAATGACTTCAAATTCTACGACACTAATGTCGATGCCGAAGACGAGCCCAAGAAGCCTGACATCTTTTCCGGCAGCAGTTTCTGGCGGGAGTTCGGGGTGGTACTGGATCCGCGAGCCAAATGGGTCCAAGAATGGAACAGGGTGTTCCTTCTGGTGAGCACCACGGGACTTTTCGTTGATCCGCTGTTCTTCTACGCGCTGTCCATAAGCGACACATGTATGTGCATCTTCATCGACGGCTGGCTCGTAATCACCGTCACCGTGCTTCGGTGCATGACCGATACGTTGCACGTGTGGAACATGTGGCTCCATTTCAAGATGGCTAAACGCTCTTCTTCTCACGCCAGAGACTCTTACGCCTGTAGCGGTGGCTATGCTCTTCGCTACCTCAAGGCTAAGAGGGGTTTCTTCTTCGATCTCTTCGTCATCTTCCCCATTCCCCAGATTGTGTTATGGGTGGTAATTCCGTCTCTTTTGGAGAAAGGATCAATTACGTTAGTGATGACAGTGTTCTTAATCATGTTCCTCTTTCAATATCTTCCCAAAATTTATCACTCGGTTTGCCTCTTGCGTCGCATGCAAAATCTTTCTGGCTACATTTTTGGAACCGTTTGGTGGGGCATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCGTGTTGGTACTTGTTAGGGTTGCAAAGGGCAGCAAAATGTTTGGAAGAACAGTGTGCAAAAACAGCAGGTTGTGGATTGAGAACACTGTGCTGCAAAAAGCCTATATACTATGGAGGAAGTAGCATTGTAAGGGACAAAACCAGATTGGCATGGGCTGAAAACAGGGAAGCAAGGTCTACTTGTTTGGACAGTGCTGATAACTACGACTATGGTGCATACGCATGGTCTGTTCAACTCATCACAAACGATAGCAGATTGGAAAAAATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATAATTGTGCTGACTAGTGGCCTCCTTCTAGTGACTATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCGACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGCAAAAGGAAGTTACCACAAAGTTTCAGGCAGCGCGTGAGAAACTATGAGAGACAGCGTTGGGCTGCCATGCGAGGGGTTGATGAATGCCAAATGATAAAGAATCTCCCAGAGGGACTAAGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTGAGGCAGGTGCCACTGTTTCAGCATATGGACGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTTCCAAAAGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTAGTAAGAGGTCACCTTCAAAGCAGCCAAGTTCTACGAGACGGGGTGAAAAGTTACTGCATGTTAGGGCCAGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTCTGAGAAGGCCGTTCATAGAGCGTCTTCCACCGTCATCAAGCACTTTGGTAACACTTGAAGCGACGGAGGCATTTGGGCTAGAAGCAAAGGACGTGAAGTACGTGACGCAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGGTATTACTCACCAGGATGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCCTGGAGAAGGTATAAGCACCGTTTGACTTTGACATGTTTGTCTTTCATAAGGCCTCGAAGACCTGCCTCAAGGTGTACTTCCATGGAGGAGGATAGGCTTCGTCTTTATACGGCATTGTTAACCTCACCAAAGCCTAATCAGGATCACTTTCACTTCTCATCATAA 2031 0.4712 MATSHYVSDSRVSRMHYSSTDDDQDDDDEEDEEDNDFKFYDTNVDAEDEPKKPDIFSGSSFWREFGVVLDPRAKWVQEWNRVFLLVSTTGLFVDPLFFYALSISDTCMCIFIDGWLVITVTVLRCMTDTLHVWNMWLHFKMAKRSSSHARDSYACSGGYALRYLKAKRGFFFDLFVIFPIPQIVLWVVIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTAGCGLRTLCCKKPIYYGGSSIVRDKTRLAWAENREARSTCLDSADNYDYGAYAWSVQLITNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRKLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFPKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDHFHFSS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01315 676 Gene3D Helix hairpin bin 402 468 - -
Vimu4g01315 676 FunFam cyclic nucleotide-gated ion channel 4 475 593 - -
Vimu4g01315 676 Pfam Ion transport protein 79 394 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu4g01315 676 MobiDBLite consensus disorder prediction 1 34 - -
Vimu4g01315 676 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Vimu4g01315 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 639 - -
Vimu4g01315 676 SUPERFAMILY cAMP-binding domain-like 403 591 IPR018490 -
Vimu4g01315 676 ProSiteProfiles cAMP/cGMP binding motif profile. 477 587 IPR000595 -
Vimu4g01315 676 CDD CAP_ED 477 583 IPR000595 -
Vimu4g01315 676 SMART cnmp_10 477 606 IPR000595 -
Vimu4g01315 676 Gene3D Jelly Rolls 475 593 IPR014710 -
Vimu4g01315 676 SUPERFAMILY Voltage-gated potassium channels 71 398 - -
Vimu4g01315 676 Pfam Cyclic nucleotide-binding domain 497 585 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01315 Vimu-Chr4 12973229 12979999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01315 57 672 Ion Channels AT5G54250 77.280 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01315 K05391 - gmx:100800795 1182.16