Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01307 ATGACCAAGTCCTCTACTGAAAAAAATGGACTCAAGAAGGGTCCATGGACCCCAGAGGAAGATCAGAAACTCATCGATTACATTCAAAAACATGGACATGGCAAATGGCGAACCCTTCCAAAAAATGCAGGACTACGAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCGAACTACTTGAGACCTGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATCCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACCCACATCAAGAAAAAGCTTTTCAAGATGGGGATTGATCCTGTGACTCACACACCACGCCTTGATGTTCTACAACTTGCCTCCATTCTCAACACATCTTTGTTCAATTCATCACCCCAATTCAATTACCCTTTTCTTTCAGGAAGATCAGTGATAAACTCCAGCCAGCTGCTAAGTTTGCTCTCCACTCTTCTCTCATGTCAAACCAGAAACAACCCTGATAATGTATTGAATCATAATAATTTCCACCAAAATGATAACCAACTCTTGCAAAATCAGCCCCAATGTACCCAAATGCAACTTGATGATACCTTACAAACCTTCCAACCAAATCAACCCCAGGTTTCACTTCAAGAAAACCTTATTGCTAAGTCTAATCCATTGAACGTGGATCACCAAAACACCCTTCCAAATCTGTGGCATTATGACAACATATCAGACTTACAAATTGCCCAATCATCATCAACTATGCAGTGTTTCTCTTCACCCAACAGTCACTTGGAAAATCAGAATCTGTGTAACAACGAGGGAATGCCAAATTTCAATTTGAGTTCACTGTTATCGTCAACAACTTCATCTTCCAGCCCAAGTACTTTGAATTCATCATCTTCCACGACATTTGTCAACGGAACCACAGAAGATGAAAGGGACACTTACGGCAGCAGCAACATTTTAATGTATAACATTTCCAATGGCTTGAATGACTCTGGACTTTTGTGA 1044 0.408 MTKSSTEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLRRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLFKMGIDPVTHTPRLDVLQLASILNTSLFNSSPQFNYPFLSGRSVINSSQLLSLLSTLLSCQTRNNPDNVLNHNNFHQNDNQLLQNQPQCTQMQLDDTLQTFQPNQPQVSLQENLIAKSNPLNVDHQNTLPNLWHYDNISDLQIAQSSSTMQCFSSPNSHLENQNLCNNEGMPNFNLSSLLSSTTSSSSPSTLNSSSSTTFVNGTTEDERDTYGSSNILMYNISNGLNDSGLL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01307 347 Gene3D - 12 65 - -
Vimu4g01307 347 FunFam Transcription factor MYB39 68 129 - -
Vimu4g01307 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vimu4g01307 347 SMART sant 65 113 IPR001005 -
Vimu4g01307 347 SMART sant 12 62 IPR001005 -
Vimu4g01307 347 CDD SANT 68 111 IPR001005 -
Vimu4g01307 347 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vimu4g01307 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vimu4g01307 347 Gene3D - 68 115 - -
Vimu4g01307 347 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vimu4g01307 347 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vimu4g01307 347 CDD SANT 15 60 IPR001005 -
Vimu4g01307 347 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vimu4g01307 347 MobiDBLite consensus disorder prediction 292 323 - -
Vimu4g01307 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 278 - -
Vimu4g01307 347 FunFam MYB-related transcription factor 12 65 - -
Vimu4g01307 347 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01307 Vimu-Chr4 12787826 12789556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01307 7 347 MYB Transcription Factor Family AT4G21440 46.429 6.14e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g01307 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01307 K09422 - gmx:100820398 517.309