Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01305 ATGGATTCCGATAACGAGTTCTCCATGCTTTCTAGAAGAGACCGGGAAACCATAAGTGATTACTTCCAAATCGAGCACGAATTCATGGCTCCTAGGTCCTTTTACTCATTATCTTCCAACGCTGAGAATCGGATGCAGGCGGTTTCGATGATAGCCAAGGTCGCTGCCACTGAACCTATGGATGCGTACATTCCATATGTTGCAGTGAATTACTTCGATCGCTTTGTTTCAACGAATTCGCTTACAGAATTACAAGGGTCTTCTTTACTTGATAAAGTTCGTTTGGTTGCAATATCTTGCTACACACTTTCCGCCAAGATGAGGACAAAGCATTTCCCACATAAGCAATTTCTGACGAGAAAAGAAGCTGTTTACAAAACCGACATCGTAATGAGAATGGAATTTCGCATTCTCAGCGGACTTGACTGGCGAATGCGATCTATAACTCCCTTTCACTTCCTGGACCACTATTATCCCACCTTCAAAAGAGTTGGTGGTTTTAAACGCCAATCCATTAATGAGATCATAGTCCAGTCTCAAGGAGAGGTCTACTTCGCTCAATTCAAACCTTCTGAAATAGCATTGTCGGCTTTAGTGGCTGCTACTTCCCTTGTATATTCCTCAAAATTTACCTTTATTGCGGGATCAATTCGCCTTACGGATAATCATATGGCCTGTTATCAAGAGATGGTTAATCTTTGTCGTAATAGGAAAATCAACATACGTAAAAGTTCTGGAGAAGTTATCTTTCCTGTTATTCCCTCCTCATCGACAACGGAATCAGAAGAAGGATTAGGAAAAGCAGCTGAATTACAAGTACAAAAACAAAGACGGAGCTCGCCGATCCTGATTTTGAACACGGTGTTGGAAAATAATGATGAAGAAGAAGAAGATGTAGCACTGTTAAACCTCCGAAAACCGAATAGGAACGAGGTAGCGGTGGAAGCACCTAAAGAAGTTGCAGAAGGTAAGAGCGAGGCTGAGAAACTACAAGAGGTGAAGGAAAGTGAAGCGAGAGTAGCAGGTATATCTGAAGAGAAAGAAGTAGAATCTGGGACCGGAGCAAGACAGGACAAGGGCGAAGGGAAATCTGAAGAAATGATAGAAGCTGAGAGCGGAAGAGATGACAAATCCAAGGAGCCCTGTGATGAAAGAGCTGATATTAACAGAGTAAGAAAGGATAAGGGTAAGGGCAAGGTTGTGGAAGAAGGAAGCGAGGCTGTAGAAGAAGAAAGCGAGCATGACTTGCAAAAAAGAAAGATAAAGGGCAAGGACAAAACTGTGGATGAAACAATATTGAGATCCGAAGGTGTAGCATTGAGGGCAATGAACTTTCAGATGCAGTGGCCTGTTATTGTGCAGCCAGGTGAGAGAATTGACAATATAGATGCTAGCCTATATGTAGATGAATCCGGCATGGCAACCACTCGATGTTCTAGAACAATAAGAGGGAGCGACTTCGTTCTACCTCTACTTTCCGACCGTTGTCGGTGCAAAATCATGTAG 1506 0.429 MDSDNEFSMLSRRDRETISDYFQIEHEFMAPRSFYSLSSNAENRMQAVSMIAKVAATEPMDAYIPYVAVNYFDRFVSTNSLTELQGSSLLDKVRLVAISCYTLSAKMRTKHFPHKQFLTRKEAVYKTDIVMRMEFRILSGLDWRMRSITPFHFLDHYYPTFKRVGGFKRQSINEIIVQSQGEVYFAQFKPSEIALSALVAATSLVYSSKFTFIAGSIRLTDNHMACYQEMVNLCRNRKINIRKSSGEVIFPVIPSSSTTESEEGLGKAAELQVQKQRRSSPILILNTVLENNDEEEEDVALLNLRKPNRNEVAVEAPKEVAEGKSEAEKLQEVKESEARVAGISEEKEVESGTGARQDKGEGKSEEMIEAESGRDDKSKEPCDERADINRVRKDKGKGKVVEEGSEAVEEESEHDLQKRKIKGKDKTVDETILRSEGVALRAMNFQMQWPVIVQPGERIDNIDASLYVDESGMATTRCSRTIRGSDFVLPLLSDRCRCKIM 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01305 501 SUPERFAMILY Cyclin-like 129 235 IPR036915 -
Vimu4g01305 501 SMART cyclin_7 43 139 IPR013763 -
Vimu4g01305 501 Pfam Cyclin, N-terminal domain 24 145 IPR006671 -
Vimu4g01305 501 Coils Coil 285 305 - -
Vimu4g01305 501 PANTHER CYCLINS 17 238 IPR039361 -
Vimu4g01305 501 Gene3D - 24 212 - -
Vimu4g01305 501 MobiDBLite consensus disorder prediction 315 413 - -
Vimu4g01305 501 SUPERFAMILY Cyclin-like 11 145 IPR036915 -
Vimu4g01305 501 Gene3D - 31 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01305 Vimu-Chr4 12773773 12777033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01305 14 234 Core Cell Cycle Gene Families AT4G03270 30.769 2.40e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01305 - - var:108332810 693.73