Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01304 ATGGATTCTCATGGAAAAACTGAACAAGTGAAGGACAGGTATCCTCGTTTGAAAGAGGATGACATTTTTGAGTCATGTCCCGTGTGCCGACGAAATTGCAACTGCCCAGCATGTTTGAGATCCGATGCACTTATTAAAGAAATGAAGCAAAAAGCAAAAACCAAAGATGAGCATGTTGAATTCTCTGTGTATTTGCTGCAAACACTTCTTCCACATTTAAGATTGTTGGATGAAGAACAAATGATTGAGAAGGAAACAAAAGCTAAGATTCAGGGTGAAGAAGTAATAAATAAAAGGGTAAACCAAACTGAATCAAACGATTTTGCTGAACCTGTAGTTCGTGAATGGTCAAGATTTGGATGGCATGGCGAAAGTAATGGTAGAATTCCTTGTCCAAAAGTTAGTGATGAATGTAACCATGGTTTTCTAGAACTGAGAAGCGTGTTAGGTCAAAATTTTATTACTGATTTATTGTGTAAAGCAAATGAACTAGCACAAAGACACGAACTTGGGACACTTGACAACTTCTGTACGTGTTCAAGGCTTGACAGGAAAACAGATGTTAGATATCATGGTATGAGGAAGGCTGCATCACGTGCATATTCTAGTGACAACTATTTGTACTGTCCTAGGGCTGTACAACCCCAGGATGAGGATTTAGGACATTTTCGGTGGCATTGGAAAAATGGAGAGCCTATTATTGTTAGCCATGCGATTGATAGTACTTCTGGTTTAAGCTGGGAACCATCTGTCATGTCTCGTGCATTGTGTCAGATAGCTAAGAGACAACATTTGGATATGAAGGCAATCAATTGCTTAGATTTTTGCGAGGTTCAAATTAAGATCCACGAATTTTTTACTGGGTATAAAGAAGGTCGTGTGGATTGCTTTGGTCAGCCTCGCATGTTGAAATTAAAAGACTGGCCATCTACTAATTTATTAGAGGAATGCTTACCTCGACATTGTGCCGAGTTCATATCTTCCTTACCATTCAAGGAATATACTGATCCATTTGGAGGTTGTCTCAACCTAGCTGTGAAATTGCCCGAAGAGTGTCTAAAGCCAGACTTGGGGCCGAAGACATATATTGCCTATGGATTCCCTCATGAGCTTGGATGTGGTGATTCTGTAACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACGCATATAGCTGAAGTTAAATTGGAAGTTACTGGCATTGAGAATTTGAAAGAGAAGCAGCAGGACGTACCTAAATTGCAGGAGTATCTGAGGAAGCATTTTAGAGAGTTTAGGCACATCGATTGCCGTCCTTTAAAGCAGTTTGAAGTATTTGGCAGACAATACCTGTTGTATATGGATAATGTATCTGCTGAGCTGAGGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACTATGGAGCACAAGAGGAAGCTAAAGGAAGAGTATGGAATTGAGCCCTGGACATTTATTCAGAAGCTAGGAGAAGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTTAGAAATCTCAAGTCGTGTAATAAGGTTGCAATGGATTTTGTTTCTCCTGAAAGTGTTTTTAACCGAGGAATTTCGTACACTTCCAATAAATCATGGGTGTGCTGA 1626 0.4004 MDSHGKTEQVKDRYPRLKEDDIFESCPVCRRNCNCPACLRSDALIKEMKQKAKTKDEHVEFSVYLLQTLLPHLRLLDEEQMIEKETKAKIQGEEVINKRVNQTESNDFAEPVVREWSRFGWHGESNGRIPCPKVSDECNHGFLELRSVLGQNFITDLLCKANELAQRHELGTLDNFCTCSRLDRKTDVRYHGMRKAASRAYSSDNYLYCPRAVQPQDEDLGHFRWHWKNGEPIIVSHAIDSTSGLSWEPSVMSRALCQIAKRQHLDMKAINCLDFCEVQIKIHEFFTGYKEGRVDCFGQPRMLKLKDWPSTNLLEECLPRHCAEFISSLPFKEYTDPFGGCLNLAVKLPEECLKPDLGPKTYIAYGFPHELGCGDSVTKLHCDMSDAVNVLTHIAEVKLEVTGIENLKEKQQDVPKLQEYLRKHFREFRHIDCRPLKQFEVFGRQYLLYMDNVSAELRVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGEAVFIPAGCPHQVRNLKSCNKVAMDFVSPESVFNRGISYTSNKSWVC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01304 541 Pfam JmjC domain, hydroxylase 458 520 IPR003347 -
Vimu4g01304 541 SMART cupin_9 318 537 IPR003347 -
Vimu4g01304 541 Gene3D Cupin 204 529 - -
Vimu4g01304 541 ProSiteProfiles JmjC domain profile. 337 537 IPR003347 -
Vimu4g01304 541 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 104 IPR045109 GO:0032454|GO:0033169
Vimu4g01304 541 SUPERFAMILY Clavaminate synthase-like 219 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01304 Vimu-Chr4 12768232 12773305 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu4g01304 JmjC 1.7e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01304 K15601 - gmx:112997634 468.003