Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01286 ATGGATTGCTATGAGGTGATAGTGTGGTGCTCTCTCTTACTTTCTTCCTTCATACCCAACATCACTGCACTGAGCAGTATCACTCCAAATAAGCCCTTGCATAATAATGAAACCCTGGTTTCAGCATCTGGAACCTTTGAAGCAGGATTCTTTAGCATTGGACGTTCTCAGAGATATTACTTTTGCATATGTTACAAGAATATATCTCCTAGAACAATTGTATGGGTGGCCAACAGAAACACCCCATTGGATAACTCCACTGGGGTTTTGAAAGTCAGTGATTGGGGGAATCTTGCTGTACTTGATGGCACTGGTGCAAATGTTTGGTCATCCAACGCATCAACCACTGTTCAGAAGCCTACTGTGGAGCTCTTGGACTCTGGCAACCTTGTTGTGAAAGATGGTGGTAGTAATGCCCCCGAAAAGATTTTGTGGCAAAGCTTTGATTATCCTGGTGACACTTTACTTCCTGGAATGAAACTCAGAAGCAGTTTTCTGACAGGTGCACTTAGTTCTCTGACATCATGGAGGAACACGGAAGATCCTGCTGTGGGGGAATTTTCATTGTATATTGATCCTCATGGTTTTCCTCAGAGAGTGACTACAAAGGGAGGGACTTGGTTGTACAGAGCAGGTTCGTGGAATGGTTATCAATTCTCAGGAGTTCCTTGGAAACTATTGCCTAATTTCTTCAATTACTATTTTGTGTTAACCAAGGAAGAAGTGTATTATGAGTATGAACTCTTGGAACGTTCTGTTGTTACAAGGTTTGTGATCAACCAAGCAGGTAGCGATCAACGTTTCACATGGTCAGAGAGAACAAAGAGTTGGGAGCTTTTTGCCTCTGGCCCCAGGGAACAGTGTGAAAACTATGCCTTGTGTGGTGTAAATTCTGTTTGCAATGTAAATAGCTACCCCATATGTGAATGCTTGGATGGTTTTGTCCCTAAGTTCACTGAGAAGTGGAGATCATTGGATTGGTCTGGTGGGTGTGTTCGGAGAATGAGTCTGAGTTGTGACAATGAAGATGGTTTTGTTAAGTACGAGGGAATGAGATTGCCAGATACATCTTCCTCCTGGTATGACGCAAGAATGAGTCTTGATGAATGTGAGAGGGTGTGCTTGCAAAACTGCTCTTGCACAGCATACACAAACTTAGATGTCAGAGGTGGTGGGAGTGGCTGCCTTCTTTGGTTTGGTAACATTGTGGATATGGGAAAACATCTCTCCCAAGGACAAGAGATTTACATACGGATGGCTGCTTCAGATATAGAGAACACTTGGCATAAAAGGCACATTAACAAGAAGCTTGTGGTGGTTTTGGCAGCACTTGTTGCGTTCATTATAGTCATAACATTAGGATCAGTTCTATACATACGGAGAAAACTTGAGAAACAAGGAAAGACAAATATCATGGACCAAATGCCTGACACTATAAAACATGGGAAGAAAGACATTGACTTACCAACCCTTGATTTATCAACCATTGATAATGCCACTCGTAATTTCTCTGTCAATAACATATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTGTTCTGGCAAATGGACAAGAAATAGCTGTTAAGAGACTTTCCAAAAATTCTGGACAAGGATTAGATGAATTCAGAAATGAAGTTGTGTTGATTGCTAATCTTCAGCACCGAAATCTTGTAAAGATTCTAGGATGTTGTGTTCAAGAGGAGGAGAGAATCTTAATATATGAATTCATGCCTAACAGGAGCTTGGATCTTTACATTTTTGATAACACAAGAAAGAAATTATTGGATTGGAGCAAACGCTTCCAAATTATAAGTGGCGTAGCTAAAGGTCTTCTCTATCTTCATCATGATTCTAGACTAAGGATCATTCACAGAGATATCAAAGCAAGCAATATTCTTCTTGATAATAGTATGAATCCAAAGATATCAGACTTTGGACTAGCAAGAATGCTTGTTGGTGATCACACTAAAGCCAATACAAAAAGGGTTGTAGGAACTCATGGTTACATGCCTCCTGAATATGCAGTGTATGGATATTTTTCAGTGAAATCAGATGTCTTCAGCTTTGGTGTTATTGTGCTAGAGATTGTTAGTGGGAGGAAGAACACAAAATTTCTTGATCCACTCAACCAACTTAACCTTATAGGGCATGCTTGGAGATTGTGGAGTGAAGGGAGGCCTTTGGAGCTGGTTGATGAATCACTGGGTGATTCAGTCATTGAAAGTGAAGTGTTGAAAATTCTTCATGTGGGGCTCTTGTGCGTGCAAGAAAGACCAGAGGATAGGCCCAACATGTCAAGTGTGGTTCTGATGCTGAATGGTGAGAGCCCATTGCCCAAGCCCAAGCAGCCTGCATTTTATCCACACCATGAAGATTTTTGTTCATCCACCAAGTGTGAATTCAGCTCAAATTATATGTCCATCAGTTTAGAGGCAAGATAG 2448 0.4122 MDCYEVIVWCSLLLSSFIPNITALSSITPNKPLHNNETLVSASGTFEAGFFSIGRSQRYYFCICYKNISPRTIVWVANRNTPLDNSTGVLKVSDWGNLAVLDGTGANVWSSNASTTVQKPTVELLDSGNLVVKDGGSNAPEKILWQSFDYPGDTLLPGMKLRSSFLTGALSSLTSWRNTEDPAVGEFSLYIDPHGFPQRVTTKGGTWLYRAGSWNGYQFSGVPWKLLPNFFNYYFVLTKEEVYYEYELLERSVVTRFVINQAGSDQRFTWSERTKSWELFASGPREQCENYALCGVNSVCNVNSYPICECLDGFVPKFTEKWRSLDWSGGCVRRMSLSCDNEDGFVKYEGMRLPDTSSSWYDARMSLDECERVCLQNCSCTAYTNLDVRGGGSGCLLWFGNIVDMGKHLSQGQEIYIRMAASDIENTWHKRHINKKLVVVLAALVAFIIVITLGSVLYIRRKLEKQGKTNIMDQMPDTIKHGKKDIDLPTLDLSTIDNATRNFSVNNILGEGGFGPVYKGVLANGQEIAVKRLSKNSGQGLDEFRNEVVLIANLQHRNLVKILGCCVQEEERILIYEFMPNRSLDLYIFDNTRKKLLDWSKRFQIISGVAKGLLYLHHDSRLRIIHRDIKASNILLDNSMNPKISDFGLARMLVGDHTKANTKRVVGTHGYMPPEYAVYGYFSVKSDVFSFGVIVLEIVSGRKNTKFLDPLNQLNLIGHAWRLWSEGRPLELVDESLGDSVIESEVLKILHVGLLCVQERPEDRPNMSSVVLMLNGESPLPKPKQPAFYPHHEDFCSSTKCEFSSNYMSISLEAR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01286 815 Gene3D Phosphorylase Kinase; domain 1 478 578 - -
Vimu4g01286 815 ProSiteProfiles Protein kinase domain profile. 503 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01286 815 CDD PAN_AP_plant 337 420 - -
Vimu4g01286 815 CDD STKc_IRAK 509 776 - -
Vimu4g01286 815 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vimu4g01286 815 CDD B_lectin 30 151 IPR001480 -
Vimu4g01286 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vimu4g01286 815 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vimu4g01286 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Vimu4g01286 815 Pfam Protein tyrosine and serine/threonine kinase 505 772 IPR001245 GO:0004672|GO:0006468
Vimu4g01286 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vimu4g01286 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 148 - -
Vimu4g01286 815 PIRSF SRK 2 814 IPR024171 GO:0004674
Vimu4g01286 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 761 - -
Vimu4g01286 815 SMART serkin_6 503 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01286 815 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vimu4g01286 815 SMART ntp_6 340 419 IPR003609 -
Vimu4g01286 815 SMART blect_4 30 151 IPR001480 -
Vimu4g01286 815 SUPERFAMILY Hairpin loop containing domain-like 341 409 - -
Vimu4g01286 815 Gene3D Hepatocyte Growth Factor 336 418 - -
Vimu4g01286 815 SUPERFAMILY Protein kinase-like (PK-like) 490 796 IPR011009 -
Vimu4g01286 815 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vimu4g01286 815 Pfam PAN-like domain 339 405 IPR003609 -
Vimu4g01286 815 Gene3D - 21 148 IPR036426 -
Vimu4g01286 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 419 - -
Vimu4g01286 815 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Vimu4g01286 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01286 Vimu-Chr4 12269212 12273147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01286 437 791 Receptor kinase-like Gene Family AT4G23190 50.975 8.58e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01286 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01286 - - vum:124842963 1618.59