Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01285 ATGGAAAGCTTAAAGGCAATGGTTTTGTGGTCTCTTGTGTTGCATTTCATACCAGGTTTGAGCACCCTTGAAACCATTGGTCCAGGCCAATCACTGAAGGATAATGAGACTCTAGTTTCAGCAGAAGGGACTTTTGAAGCAGGGTTCTTCAACTTTGGAGATCAAAGTAGTCAATACTTTGGTATATGGTACAAGTATATTTCTCCAAGAACAGTTGTGTGGATAGCAAATAGAGATACTCCAGTTCAAAACTCCTCAGGAGTTTTGAATGTAACTCGTGTGGGAAATCTTTTCATTTTGAATGGTTCAGGGGCCATAATCTGGTCTTCCAATACATCAACAGCTGCAAAGAATCCTGTTGTGCAGCTTTTGGAGACTGGAAATCTTGTTATGAGAGAAGAAAGCAACCCAGAGAATCTTCTATGGCAGAGTTTTGATCTTCCTGGGGACACTTTGTTGCCAGGGATGCGACTTCGAAGTAGCATGGTAAATGGTAGTTTTACATCTCTGACATCTTGGAGAGACACAGAAGATCCTGGTAGAGGTGTGTATTCATATCACATAGATACTCGTGGTTTTCCTCAAGTGGTGATTACGAAGGGAGGGGCATTGTTGTATAGGCCAGGTTCATGGAATGGCAATATTTTATCTGGGATTCCTTCTGCAACATTGTACAAAAACTTTAATTTCTCTTTTGTTATAACTGAGAAGGAAGTTTCTTATGGATATGAACTGCTGAACAAGTCCATTGTTTCGAGGTACATGATCACGTTAACAGGTCAAATACAACGTTTTGTTTTGTCTGATTTGACAAGTAGTTGGCAGCTTTTCTACTCAGGCCCCGCAGACCAGTGTGATAATTATGCCGTTTGTGGGGTGAATTCTAATTGTGATGTAAATAGCTCTCCAACGTGCGAGTGCCTTCAGGGTTTCATTCCCAGATCTGAAGAAAAATGGAATGCACAAAACTGGTCAGATGGGTGTGTTAGGAGAGCTAATTTAGATTGTGGCAACAGTGATGGCTTTCTGAAGTATCAGGGAATGAAGTTGCCGGACACATCAACCTCATGGTTTGACAGAAGCATGAACCTTGAGGAATGTAAGAATTTCTGTCTGGGAAACTGCTCCTGCACAGCATATGCAAATTTAGATATCAGAAATGGTGGAAGTGGATGCTTGCTTTGGTTTAATAACATTGTGGATCTGAGAAAACTAACCACCGGAGGACAAGATCTTTTCATAAGAGTGGCAGCTTCAGATCTAGGTCATGAAAAAGGCTTACGCAAGAAGCAGCTTGCAGGAATTCTTGCAGGTTCTGCAGTGTTTATTGTGGTCATGATATTATTGGCAGTGGCCATATTCCGGAGAAAAAGGCTTGAGAAGCCAGGAAGCAACAAAAGTGTTAGCTGGAAGAATCATACTGTTAAGACACAGAAGGAAGACATTGACATTCCAATATTTAAGTTTTCAACCATAGCTAATGCAACTAATAACTTTTGCGTTACTAACATATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTACTTTGGCAAATGGCCAAGATATAGCTGTGAAGCGGCTTTGCAATAATTCAGGGCAAGGACCAAAAGAGTTCATAAACGAAGTTGTGCTAATTGCTAATCTTCAGCACCGGAACCTTGTGAAGCTTCTTGGGTGTTGCATTCAAGAGGATGAGAGGATCTTGATATATGAATTCATGACTAACAAAAGCTTGAACTACTTTATTTTTGGTCATAAATTTTATCTTGTCCCAACACTTGGTCTTATCTTGCCATGA 1803 0.4071 MESLKAMVLWSLVLHFIPGLSTLETIGPGQSLKDNETLVSAEGTFEAGFFNFGDQSSQYFGIWYKYISPRTVVWIANRDTPVQNSSGVLNVTRVGNLFILNGSGAIIWSSNTSTAAKNPVVQLLETGNLVMREESNPENLLWQSFDLPGDTLLPGMRLRSSMVNGSFTSLTSWRDTEDPGRGVYSYHIDTRGFPQVVITKGGALLYRPGSWNGNILSGIPSATLYKNFNFSFVITEKEVSYGYELLNKSIVSRYMITLTGQIQRFVLSDLTSSWQLFYSGPADQCDNYAVCGVNSNCDVNSSPTCECLQGFIPRSEEKWNAQNWSDGCVRRANLDCGNSDGFLKYQGMKLPDTSTSWFDRSMNLEECKNFCLGNCSCTAYANLDIRNGGSGCLLWFNNIVDLRKLTTGGQDLFIRVAASDLGHEKGLRKKQLAGILAGSAVFIVVMILLAVAIFRRKRLEKPGSNKSVSWKNHTVKTQKEDIDIPIFKFSTIANATNNFCVTNILGEGGFGPVYKGTLANGQDIAVKRLCNNSGQGPKEFINEVVLIANLQHRNLVKLLGCCIQEDERILIYEFMTNKSLNYFIFGHKFYLVPTLGLILP 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01285 600 SMART ntp_6 337 416 IPR003609 -
Vimu4g01285 600 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 179 IPR036426 -
Vimu4g01285 600 CDD B_lectin 30 148 IPR001480 -
Vimu4g01285 600 Gene3D Hepatocyte Growth Factor 332 414 - -
Vimu4g01285 600 Pfam PAN-like domain 336 402 IPR003609 -
Vimu4g01285 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 145 - -
Vimu4g01285 600 Pfam S-locus glycoprotein domain 206 314 IPR000858 GO:0048544
Vimu4g01285 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 416 - -
Vimu4g01285 600 SUPERFAMILY Protein kinase-like (PK-like) 468 590 IPR011009 -
Vimu4g01285 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 574 - -
Vimu4g01285 600 Pfam Protein tyrosine and serine/threonine kinase 502 584 IPR001245 GO:0004672|GO:0006468
Vimu4g01285 600 SMART blect_4 29 148 IPR001480 -
Vimu4g01285 600 Pfam D-mannose binding lectin 71 174 IPR001480 -
Vimu4g01285 600 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 584 - -
Vimu4g01285 600 ProSiteProfiles Protein kinase domain profile. 499 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01285 600 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Vimu4g01285 600 Gene3D - 21 145 IPR036426 -
Vimu4g01285 600 CDD PAN_AP_plant 333 417 - -
Vimu4g01285 600 Gene3D Phosphorylase Kinase; domain 1 472 574 - -
Vimu4g01285 600 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01285 Vimu-Chr4 12252280 12254840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01285 425 585 Receptor kinase-like Gene Family AT4G23190 46.584 1.61e-39 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01285 S_locus_glycop 9.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01285 - - vum:124842963 1159.05